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DTPAA CHIP EXPERIMENT, ID29, X,Y SPACING 75,75
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I4C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 PEG 6K, HEPES 7.0
Crystal Properties Matthews coefficient Solvent content 2.34 47.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.6 α = 90 b = 68.8 β = 105.8 c = 75.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL PSI JUNGFRAU 4M 2024-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.073 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 40 100 0.138 6.5 651 84225
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 1.325
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.67 37.66 79852 4325 99.92 0.15429 0.15269 0.18222 0.1963 RANDOM 23.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 -0.54 -0.69 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.565 r_long_range_B_refined 7.846 r_long_range_B_other 7.464 r_dihedral_angle_2_deg 6.79 r_dihedral_angle_1_deg 6.357 r_scangle_other 5.131 r_scbond_other 3.23 r_scbond_it 3.229 r_mcangle_it 2.634 r_mcangle_other 2.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.565 r_long_range_B_refined 7.846 r_long_range_B_other 7.464 r_dihedral_angle_2_deg 6.79 r_dihedral_angle_1_deg 6.357 r_scangle_other 5.131 r_scbond_other 3.23 r_scbond_it 3.229 r_mcangle_it 2.634 r_mcangle_other 2.634 r_mcbond_it 1.903 r_mcbond_other 1.879 r_angle_refined_deg 1.697 r_angle_other_deg 0.575 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5625 Nucleic Acid Atoms Solvent Atoms 595 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystFEL data scaling CrystFEL data reduction PHASER phasing