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Crystal structure of RhoA-TP1001 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FTN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 289 0.5 M Lithium sulfate monohydrate,0.1 M HEPES pH 7.5,30% w/v Polyethylene glycol 3,350
Crystal Properties Matthews coefficient Solvent content 2.53 51.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.24 α = 90 b = 124.8 β = 90 c = 173.5 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2024-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.979183 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 44.12 99.9 0.987 10.6 11.8 16388
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.31 0.439 0.978
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FTN 3.1 44.08 15513 849 99.86 0.31298 0.31065 0.314 0.3541 0.3346 RANDOM 33.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.15 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.91 r_dihedral_angle_2_deg 9.13 r_dihedral_angle_1_deg 8.476 r_long_range_B_refined 6.14 r_long_range_B_other 6.14 r_mcangle_it 3.569 r_mcangle_other 3.569 r_scangle_other 3.076 r_mcbond_it 2.1 r_mcbond_other 2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.91 r_dihedral_angle_2_deg 9.13 r_dihedral_angle_1_deg 8.476 r_long_range_B_refined 6.14 r_long_range_B_other 6.14 r_mcangle_it 3.569 r_mcangle_other 3.569 r_scangle_other 3.076 r_mcbond_it 2.1 r_mcbond_other 2.1 r_scbond_it 1.796 r_scbond_other 1.793 r_angle_refined_deg 1.609 r_angle_other_deg 0.563 r_chiral_restr 0.074 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5593 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 145
Software Software Software Name Purpose REFMAC refinement HKL-3000 data scaling HKL-3000 data reduction PHASER phasing