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Coprinopsis cinerea GH131 protein CcGH131B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W9A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 10000, PEG 20000, MES-NaOH
Crystal Properties Matthews coefficient Solvent content 2.39 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.849 α = 90 b = 71.849 β = 90 c = 225.802 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2015-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 47.9 100 0.119 0.041 28.6 9.4 51549
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 0.457 0.159 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 36.55 49044 2412 99.72 0.18164 0.1799 0.188 0.21575 0.2176 RANDOM 28.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.753 r_dihedral_angle_1_deg 7.829 r_long_range_B_refined 6.329 r_dihedral_angle_2_deg 6.32 r_long_range_B_other 6.297 r_scangle_other 4.365 r_mcangle_it 3.822 r_mcangle_other 3.821 r_scbond_it 2.834 r_scbond_other 2.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.753 r_dihedral_angle_1_deg 7.829 r_long_range_B_refined 6.329 r_dihedral_angle_2_deg 6.32 r_long_range_B_other 6.297 r_scangle_other 4.365 r_mcangle_it 3.822 r_mcangle_other 3.821 r_scbond_it 2.834 r_scbond_other 2.833 r_mcbond_it 2.539 r_mcbond_other 2.539 r_angle_refined_deg 1.391 r_angle_other_deg 0.762 r_chiral_restr 0.066 r_gen_planes_other 0.009 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4793 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing