☰ Navigation Tabs
FOXO3 pS413 phosphopeptide binding to 14-3-3sigma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.62 53.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.147 α = 90 b = 112.039 β = 90 c = 63.069 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 63.07 100 0.999 14.3 12.9 64111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 0.394 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.35 45.72 60788 3293 99.98 0.16195 0.16047 0.1577 0.18876 0.1934 RANDOM 23.752
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.6 -1.98 -2.62
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 14.904 r_long_range_B_other 13.874 r_dihedral_angle_3_deg 13.422 r_scangle_other 11.275 r_dihedral_angle_1_deg 9.525 r_scbond_it 7.935 r_scbond_other 7.911 r_mcangle_other 7.742 r_mcangle_it 7.728 r_mcbond_it 5.462
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 14.904 r_long_range_B_other 13.874 r_dihedral_angle_3_deg 13.422 r_scangle_other 11.275 r_dihedral_angle_1_deg 9.525 r_scbond_it 7.935 r_scbond_other 7.911 r_mcangle_other 7.742 r_mcangle_it 7.728 r_mcbond_it 5.462 r_mcbond_other 5.447 r_rigid_bond_restr 3.394 r_angle_refined_deg 1.034 r_angle_other_deg 0.456 r_chiral_restr 0.05 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1934 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 6
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing