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Carbamoyl transferase NovN involved in Novobiocin biosynthesis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 291 NULL
Crystal Properties Matthews coefficient Solvent content 3.31 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.5 α = 90 b = 113.26 β = 90 c = 166.71 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9507 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 46.95 94.1 0.06 0.071 0.039 0.998 17.2 5.6 46701
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.24 2.31 69.2 0.223 0.279 0.165 0.909 4.2 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 2.24 39.173 46699 2364 94.032 0.162 0.1599 0.1599 0.2 0.2001 35.102
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.583 2.055 -0.472
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.652 r_dihedral_angle_3_deg 12.044 r_lrange_it 6.758 r_dihedral_angle_1_deg 6.757 r_dihedral_angle_2_deg 6.331 r_scangle_it 4.07 r_mcangle_it 3.008 r_scbond_it 2.605 r_mcbond_it 1.85 r_angle_refined_deg 1.511
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.652 r_dihedral_angle_3_deg 12.044 r_lrange_it 6.758 r_dihedral_angle_1_deg 6.757 r_dihedral_angle_2_deg 6.331 r_scangle_it 4.07 r_mcangle_it 3.008 r_scbond_it 2.605 r_mcbond_it 1.85 r_angle_refined_deg 1.511 r_nbtor_refined 0.305 r_nbd_refined 0.199 r_symmetry_nbd_refined 0.151 r_xyhbond_nbd_refined 0.124 r_symmetry_xyhbond_nbd_refined 0.115 r_chiral_restr 0.108 r_bond_refined_d 0.006 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5194 Nucleic Acid Atoms Solvent Atoms 434 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement Aimless data scaling MOSFLM data reduction gemmi data extraction SHELXDE phasing