UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 1NKH designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 1NKH_UDP_D_810 | 98% | 20% | 0.044 | 0.978 | 1.83 | 1.47 | 4 | 7 | 3 | 0 | 100% | 1 |
| 1NKH_UDP_B_809 | 96% | 19% | 0.053 | 0.972 | 1.81 | 1.53 | 4 | 7 | 1 | 0 | 100% | 1 |
| 1NKH_UDP_B_811 | 34% | 21% | 0.123 | 0.802 | 1.78 | 1.47 | 3 | 6 | 2 | 0 | 100% | 1 |
| 1NKH_UDP_D_812 | 27% | 22% | 0.123 | 0.768 | 1.71 | 1.47 | 4 | 7 | 0 | 0 | 100% | 1 |
| 2FYD_UDP_D_528 | 90% | 17% | 0.068 | 0.955 | 1.67 | 1.82 | 5 | 11 | 2 | 0 | 100% | 1 |
| 1NHE_UDP_D_810 | 32% | 13% | 0.147 | 0.821 | 2.52 | 1.41 | 4 | 8 | 5 | 0 | 100% | 1 |
| 2FYC_UDP_B_405 | 21% | 19% | 0.162 | 0.774 | 1.9 | 1.46 | 3 | 8 | 0 | 0 | 100% | 1 |
| 1YRO_UDP_D_530 | 15% | 19% | 0.171 | 0.738 | 1.82 | 1.51 | 2 | 6 | 0 | 0 | 100% | 1 |
| 1O23_UDP_B_811 | 14% | 19% | 0.145 | 0.697 | 1.91 | 1.47 | 3 | 7 | 1 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |