Ligand validation:2DGN

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2DGN designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2DGN_GDP_A_1452	86%	54%	0.111	0.981	0.94	0.86	2	2	0	0	100%	1
1LNY_GDP_B_1454	82%	53%	0.107	0.961	1.01	0.8	2	2	3	0	100%	1
1MF0_GDP_A_1452	79%	53%	0.13	0.976	0.92	0.91	2	2	1	0	100%	1
1LON_GDP_A_1453	77%	55%	0.126	0.966	0.92	0.81	2	1	1	0	100%	1
1MEZ_GDP_A_1452	70%	53%	0.147	0.966	1.02	0.82	2	1	0	0	100%	1
1RRG_GDP_A_183	100%	17%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
2CXX_GDP_B_2401	100%	29%	0.031	0.989	1.26	1.57	1	3	0	0	100%	1
4LUC_GDP_A_204	100%	40%	0.036	0.992	1.22	1.11	2	2	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
4PZZ_GDP_A_201	100%	54%	0.035	0.989	0.92	0.86	1	1	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.