GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2NPF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2NPF_GDP_A_902 | 78% | 51% | 0.126 | 0.968 | 1.18 | 0.73 | 4 | - | 4 | 0 | 100% | 1 |
| 2NPF_GDP_B_1902 | 53% | 49% | 0.159 | 0.92 | 1.12 | 0.84 | 2 | - | 2 | 0 | 100% | 1 |
| 1U2R_GDP_A_1920 | 75% | 51% | 0.129 | 0.962 | 1.08 | 0.82 | 3 | 1 | 3 | 0 | 100% | 1 |
| 2E1R_GDP_A_902 | 45% | 51% | 0.215 | 0.948 | 1.1 | 0.8 | 3 | - | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
