GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2OM2 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2OM2_GDP_C_356 | 75% | 39% | 0.096 | 0.931 | 1.17 | 1.1 | 3 | 4 | 2 | 0 | 100% | 1 |
| 2OM2_GDP_A_355 | 74% | 44% | 0.1 | 0.934 | 1.02 | 1.06 | 2 | 4 | 1 | 0 | 100% | 1 |
| 1AS2_GDP_A_355 | 100% | 24% | 0.033 | 0.99 | 1.32 | 1.69 | 3 | 10 | 0 | 0 | 100% | 1 |
| 2XNS_GDP_A_1348 | 100% | 25% | 0.037 | 0.992 | 1.14 | 1.78 | 3 | 7 | 5 | 0 | 100% | 1 |
| 4PAN_GDP_A_401 | 99% | 24% | 0.037 | 0.989 | 1.29 | 1.7 | 4 | 7 | 0 | 0 | 100% | 1 |
| 1AS3_GDP_A_355 | 99% | 45% | 0.037 | 0.987 | 1.21 | 0.83 | 4 | 1 | 3 | 0 | 100% | 1 |
| 3UMR_GDP_A_400 | 99% | 29% | 0.039 | 0.987 | 1.16 | 1.59 | 2 | 7 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 25% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 34% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 23% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
