Ligand validation:2QCL


OMP: OROTIDINE-5'-MONOPHOSPHATE

OMP is a Ligand Of Interest in 2QCL designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2QCL_OMP_B_2Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2QCL_OMP_B_2Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2QCL_OMP_B_2Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2QCL_OMP_B_2 94% 12% 0.076 0.9762.34 1.71 1 510100%1
2QCL_OMP_A_1 89% 13% 0.084 0.9632.44 1.56 2 510100%1
7AM9_OMP_A_501 100% 20% 0.039 0.9971.04 2.32 2 300100%0.72
7OQI_OMP_A_504 100% 35% 0.045 0.9961.06 1.47 2 200100%0.51
6ZX0_OMP_A_501 100% 32% 0.041 0.9911.1 1.59 2 200100%0.75
6YVO_OMP_A_501 100% 31% 0.041 0.9881.12 1.62 2 300100%0.72
7OQF_OMP_A_504 100% 33% 0.047 0.9941.08 1.58 1 200100%0.69
7OQM_OMP_A_504 100% 33% 0.049 0.9950.92 1.71 1 300100%14.000000000000002