MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD is a Ligand Of Interest in 2VPY designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2VPY_MGD_E_1765 | 81% | 5% | 0.097 | 0.955 | 2.08 | 3.13 | 13 | 22 | 5 | 0 | 100% | 1 |
| 2VPY_MGD_E_1766 | 79% | 6% | 0.101 | 0.952 | 2.2 | 2.62 | 14 | 19 | 7 | 0 | 100% | 1 |
| 2VPY_MGD_A_1766 | 73% | 6% | 0.11 | 0.941 | 1.97 | 2.98 | 13 | 21 | 3 | 0 | 100% | 1 |
| 2VPY_MGD_A_1765 | 65% | 6% | 0.121 | 0.926 | 1.9 | 3 | 12 | 19 | 4 | 0 | 100% | 1 |
| 2VPZ_MGD_A_1765 | 95% | 6% | 0.067 | 0.979 | 1.78 | 3.03 | 9 | 19 | 4 | 0 | 100% | 1 |
| 2VPW_MGD_A_1766 | 86% | 4% | 0.085 | 0.958 | 2.6 | 2.94 | 19 | 21 | 5 | 0 | 100% | 1 |
| 2VPX_MGD_A_1765 | 69% | 3% | 0.114 | 0.929 | 2.76 | 3.05 | 21 | 19 | 7 | 0 | 100% | 1 |
| 5E7O_MGD_G_1003 | 100% | 1% | 0.021 | 0.997 | 5.18 | 1.97 | 30 | 19 | 3 | 0 | 100% | 1 |
| 8CM5_MGD_A_1104 | 100% | 45% | 0.022 | 0.996 | 0.75 | 1.26 | 1 | 5 | 3 | 0 | 100% | 1 |
| 8R3A_MGD_A_912 | 100% | 43% | 0.026 | 0.994 | 0.92 | 1.18 | 2 | 4 | 2 | 0 | 100% | 1 |
| 3ML1_MGD_A_1804 | 100% | 21% | 0.027 | 0.994 | 1.34 | 1.86 | 8 | 17 | 2 | 0 | 100% | 1 |
| 7Z5O_MGD_AAA_1101 | 100% | 55% | 0.027 | 0.994 | 0.64 | 0.96 | - | 3 | 1 | 0 | 100% | 1 |
