MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD is a Ligand Of Interest in 2VPY designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2VPY_MGD_E_1765 | 68% | 7% | 0.097 | 0.955 | 1.96 | 2.82 | 12 | 18 | 5 | 0 | 100% | 1 |
| 2VPY_MGD_E_1766 | 66% | 7% | 0.101 | 0.952 | 2.16 | 2.58 | 13 | 18 | 7 | 0 | 100% | 1 |
| 2VPY_MGD_A_1766 | 60% | 6% | 0.11 | 0.941 | 2.01 | 2.88 | 13 | 17 | 3 | 0 | 100% | 1 |
| 2VPY_MGD_A_1765 | 53% | 7% | 0.121 | 0.926 | 1.95 | 2.84 | 12 | 16 | 4 | 0 | 100% | 1 |
| 2VPZ_MGD_A_1765 | 85% | 8% | 0.067 | 0.979 | 1.74 | 2.86 | 7 | 16 | 4 | 0 | 100% | 1 |
| 2VPW_MGD_A_1766 | 73% | 4% | 0.085 | 0.958 | 2.6 | 2.94 | 19 | 21 | 5 | 0 | 100% | 1 |
| 2VPX_MGD_A_1765 | 56% | 4% | 0.114 | 0.929 | 2.81 | 2.88 | 20 | 16 | 7 | 0 | 100% | 1 |
| 8CM5_MGD_A_1105 | 100% | 48% | 0.017 | 0.998 | 0.77 | 1.14 | 1 | 6 | 1 | 0 | 100% | 1 |
| 5E7O_MGD_G_1003 | 100% | 2% | 0.021 | 0.997 | 5.18 | 1.97 | 30 | 19 | 3 | 0 | 100% | 1 |
| 8R3A_MGD_A_912 | 99% | 51% | 0.026 | 0.994 | 0.81 | 0.95 | 2 | 3 | 2 | 0 | 100% | 1 |
| 7Z5O_MGD_AAA_1101 | 99% | 54% | 0.027 | 0.994 | 0.64 | 0.96 | - | 3 | 1 | 0 | 100% | 1 |
| 8CM6_MGD_A_1103 | 99% | 49% | 0.028 | 0.993 | 0.8 | 1.06 | 1 | 5 | 1 | 0 | 100% | 1 |
