CDP: CYTIDINE-5'-DIPHOSPHATE
CDP is a Ligand Of Interest in 3EE3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3EE3_CDP_E_164 | 90% | 51% | 0.082 | 0.966 | 0.79 | 1.1 | - | 4 | 0 | 0 | 100% | 1 |
3EE3_CDP_C_162 | 89% | 55% | 0.086 | 0.966 | 0.76 | 0.96 | 1 | 2 | 1 | 0 | 100% | 1 |
3EE3_CDP_A_160 | 89% | 43% | 0.089 | 0.967 | 0.92 | 1.26 | 2 | 6 | 0 | 0 | 100% | 1 |
3EE3_CDP_D_163 | 87% | 54% | 0.094 | 0.966 | 0.79 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
3EE3_CDP_F_165 | 86% | 46% | 0.092 | 0.959 | 0.85 | 1.22 | - | 3 | 0 | 0 | 100% | 1 |
3EE3_CDP_B_161 | 84% | 55% | 0.095 | 0.957 | 0.77 | 0.96 | 1 | 2 | 0 | 0 | 100% | 1 |
3BOS_CDP_B_300 | 100% | 55% | 0.046 | 0.988 | 0.92 | 0.81 | 1 | 1 | 0 | 0 | 100% | 1 |
2VBU_CDP_A_1133 | 96% | 45% | 0.078 | 0.989 | 0.89 | 1.22 | - | 3 | 0 | 0 | 100% | 1 |
3ETM_CDP_A_201 | 95% | 34% | 0.076 | 0.979 | 0.93 | 1.67 | - | 5 | 0 | 0 | 100% | 1 |
4C81_CDP_A_1242 | 93% | 39% | 0.074 | 0.968 | 1.4 | 0.99 | 5 | 1 | 0 | 0 | 100% | 0.6 |
1GX1_CDP_B_1157 | 92% | 42% | 0.075 | 0.967 | 1.04 | 1.19 | 2 | 2 | 0 | 0 | 100% | 1 |