UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3HE3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 3HE3_UDP_C_400 | 97% | 33% | 0.048 | 0.975 | 1 | 1.55 | - | 6 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_I_400 | 96% | 31% | 0.052 | 0.971 | 1.01 | 1.6 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_G_400 | 96% | 32% | 0.054 | 0.971 | 1.01 | 1.58 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_A_400 | 96% | 34% | 0.058 | 0.975 | 0.98 | 1.52 | - | 6 | 2 | 0 | 100% | 1 |
| 3HE3_UDP_H_400 | 95% | 32% | 0.058 | 0.97 | 1.02 | 1.56 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_E_400 | 95% | 34% | 0.06 | 0.972 | 0.99 | 1.51 | - | 5 | 1 | 0 | 100% | 1 |
| 3HE3_UDP_F_400 | 95% | 31% | 0.057 | 0.967 | 1 | 1.61 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_B_400 | 95% | 31% | 0.059 | 0.968 | 1.03 | 1.6 | 2 | 5 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_J_400 | 94% | 32% | 0.061 | 0.965 | 1 | 1.59 | - | 6 | 0 | 0 | 100% | 1 |
| 3HE3_UDP_D_400 | 93% | 31% | 0.064 | 0.966 | 1.03 | 1.59 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3MJ4_UDP_A_500 | 82% | 26% | 0.086 | 0.944 | 1.07 | 1.78 | 2 | 8 | 1 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |