UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3PE3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3PE3_UDP_A_1201 | 98% | 32% | 0.053 | 0.985 | 1.05 | 1.54 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3PE3_UDP_B_1201 | 98% | 31% | 0.054 | 0.983 | 1.01 | 1.6 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3PE3_UDP_D_1201 | 97% | 33% | 0.059 | 0.98 | 1.02 | 1.5 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3PE3_UDP_C_1201 | 91% | 30% | 0.074 | 0.966 | 1.02 | 1.66 | 1 | 6 | 1 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 99% | 34% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5VIF_UDP_A_1100 | 99% | 17% | 0.039 | 0.987 | 1.45 | 2.02 | 5 | 6 | 1 | 0 | 100% | 1 |
| 5LWV_UDP_A_1201 | 99% | 24% | 0.042 | 0.988 | 1.05 | 1.93 | 2 | 12 | 0 | 0 | 100% | 1 |
| 4N39_UDP_A_1201 | 99% | 33% | 0.042 | 0.984 | 0.99 | 1.55 | 1 | 5 | 0 | 0 | 100% | 1 |
| 4N3A_UDP_A_1201 | 99% | 31% | 0.045 | 0.985 | 0.97 | 1.66 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
