TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3VBM designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3VBM_TYD_A_301 | 93% | 16% | 0.06 | 0.962 | 1.31 | 2.28 | 3 | 8 | 0 | 0 | 100% | 1 |
| 3VBM_TYD_E_301 | 93% | 24% | 0.062 | 0.961 | 1.29 | 1.72 | 2 | 8 | 0 | 0 | 100% | 1 |
| 3VBM_TYD_C_301 | 88% | 13% | 0.071 | 0.951 | 1.4 | 2.46 | 4 | 11 | 0 | 0 | 100% | 1 |
| 3VBJ_TYD_E_301 | 67% | 23% | 0.099 | 0.906 | 1.31 | 1.73 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3VBP_TYD_E_301 | 65% | 21% | 0.099 | 0.899 | 1.33 | 1.88 | 3 | 10 | 0 | 0 | 100% | 1 |
| 3VBN_TYD_A_301 | 59% | 21% | 0.106 | 0.888 | 1.35 | 1.85 | 3 | 8 | 0 | 0 | 100% | 1 |
| 2PAM_TYD_B_140 | 100% | 31% | 0.019 | 0.997 | 1.5 | 1.17 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5TPU_TYD_A_200 | 100% | 21% | 0.022 | 0.995 | 1.32 | 1.86 | 3 | 14 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 100% | 21% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 100% | 22% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 1PN3_TYD_A_406 | 99% | 53% | 0.04 | 0.991 | 0.96 | 0.74 | 1 | 1 | 5 | 0 | 100% | 1 |
