GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 4HLQ designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4HLQ_GDP_D_202Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4HLQ_GDP_D_202Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4HLQ_GDP_D_202Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4HLQ_GDP_D_202 64% 17% 0.164 0.9652.04 1.59 4 600100%1
4HLQ_GDP_H_202 64% 16% 0.152 0.9521.98 1.71 4 5110100%1
4HLQ_GDP_F_202 60% 20% 0.171 0.9571.91 1.5 6 510100%1
4HLQ_GDP_B_202 57% 19% 0.18 0.9572.05 1.45 5 520100%1
4HLQ_GDP_J_202 52% 17% 0.18 0.9392.01 1.59 3 630100%1
8ALK_GDP_B_201 79% 43% 0.118 0.9650.93 1.28 1 400100%1
4I1O_GDP_G_202 79% 39% 0.129 0.9761.22 1.18 1 4120100%1
6SKU_GDP_B_201 62% 45% 0.165 0.9590.97 1.15 1 200100%1
5O74_GDP_B_500 50% 41% 0.186 0.9390.93 1.36 1 400100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1