GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5IH1 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5IH1_GDP_A_401 | 98% | 58% | 0.055 | 0.977 | 0.84 | 0.77 | - | - | 0 | 0 | 100% | 1 |
5IGY_GDP_A_402 | 98% | 50% | 0.06 | 0.982 | 1.01 | 0.92 | 1 | 1 | 0 | 0 | 100% | 1 |
5IGZ_GDP_A_401 | 96% | 51% | 0.079 | 0.986 | 0.67 | 1.2 | - | 3 | 0 | 0 | 100% | 1 |
5IGV_GDP_A_403 | 80% | 49% | 0.087 | 0.936 | 0.82 | 1.13 | - | 2 | 4 | 0 | 100% | 0.9529 |
5IGW_GDP_A_401 | 73% | 46% | 0.111 | 0.937 | 1.05 | 1.04 | 2 | 3 | 0 | 0 | 100% | 0.94 |
5IH0_GDP_A_403 | 41% | 45% | 0.148 | 0.86 | 0.91 | 1.19 | - | 4 | 1 | 0 | 100% | 0.9643 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |