GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5JCZ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5JCZ_GDP_D_202 | 86% | 45% | 0.113 | 0.983 | 0.93 | 1.19 | 1 | 3 | 1 | 0 | 100% | 1 |
| 5JCZ_GDP_A_202 | 85% | 47% | 0.118 | 0.985 | 0.93 | 1.12 | 1 | 3 | 1 | 0 | 100% | 1 |
| 5JCZ_GDP_I_202 | 39% | 42% | 0.197 | 0.903 | 0.93 | 1.29 | 1 | 4 | 0 | 0 | 100% | 0.3 |
| 4LX0_GDP_C_203 | 93% | 37% | 0.089 | 0.986 | 1.02 | 1.42 | 2 | 6 | 0 | 0 | 100% | 1 |
| 1OIX_GDP_A_201 | 93% | 28% | 0.081 | 0.976 | 1.52 | 1.35 | 4 | 4 | 0 | 0 | 100% | 1 |
| 6IY1_GDP_A_201 | 90% | 44% | 0.092 | 0.974 | 0.96 | 1.18 | 1 | 3 | 0 | 0 | 100% | 1 |
| 1OIV_GDP_B_1175 | 87% | 31% | 0.102 | 0.973 | 1.39 | 1.37 | 3 | 5 | 0 | 0 | 100% | 1 |
| 4LWZ_GDP_A_201 | 86% | 40% | 0.111 | 0.979 | 1.03 | 1.31 | 1 | 4 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
