PDG: N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID
PDG is a Ligand Of Interest in 5K8B designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5K8B_PDG_C_501 | 100% | 9% | 0.025 | 0.995 | 1.93 | 2.47 | 3 | 12 | 7 | 0 | 100% | 1 |
| 5K8B_PDG_A_501 | 100% | 8% | 0.026 | 0.995 | 1.99 | 2.5 | 4 | 11 | 5 | 0 | 100% | 1 |
| 5K8B_PDG_D_501 | 100% | 8% | 0.027 | 0.995 | 1.98 | 2.47 | 4 | 10 | 6 | 0 | 100% | 1 |
| 5K8B_PDG_B_501 | 100% | 7% | 0.035 | 0.99 | 2.69 | 2.06 | 10 | 9 | 6 | 0 | 100% | 1 |
| 1X2A_PDG_A_413 | 95% | 3% | 0.059 | 0.973 | 2.12 | 3.84 | 8 | 18 | 1 | 0 | 100% | 1 |
| 2GMU_PDG_B_501 | 89% | 5% | 0.082 | 0.968 | 1.89 | 3.33 | 6 | 9 | 7 | 1 | 100% | 1 |
| 8VR5_PDG_D_401 | 86% | 37% | 0.096 | 0.97 | 0.96 | 1.39 | 1 | 3 | 4 | 0 | 100% | 1 |
| 4CE5_PDG_B_1181 | 72% | 21% | 0.132 | 0.961 | 1.82 | 1.39 | 4 | 6 | 3 | 0 | 100% | 0.67 |
