GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5WHB designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5WHB_GDP_A_201 | 79% | 42% | 0.113 | 0.959 | 0.94 | 1.28 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5WHB_GDP_J_201 | 74% | 42% | 0.116 | 0.945 | 0.94 | 1.29 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5WHB_GDP_D_201 | 73% | 44% | 0.124 | 0.952 | 0.94 | 1.22 | 1 | 4 | 1 | 0 | 100% | 1 |
| 5WHB_GDP_G_201 | 73% | 42% | 0.128 | 0.956 | 0.94 | 1.3 | 1 | 4 | 2 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 4PZZ_GDP_A_201 | 100% | 54% | 0.035 | 0.989 | 0.92 | 0.86 | 1 | 1 | 0 | 0 | 100% | 1 |
| 5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
| 6TAN_GDP_A_201 | 100% | 55% | 0.046 | 0.99 | 0.88 | 0.86 | - | 1 | 0 | 0 | 100% | 1 |
| 7RT1_GDP_A_201 | 100% | 53% | 0.048 | 0.992 | 0.96 | 0.87 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
