TD6: (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid

TD6 is a Ligand Of Interest in 5Z2R designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2R_TD6_B_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2R_TD6_B_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2R_TD6_B_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5Z2R_TD6_B_601 82% 7% 0.112 0.9663.1 1.79 7 790100%1
5Z2R_TD6_D_601 77% 7% 0.123 0.9633.05 1.9 6 770100%1
5Z2R_TD6_C_601 77% 7% 0.127 0.9663.01 1.8 7 750100%1
5Z2R_TD6_G_601 75% 7% 0.127 0.9613.04 1.77 6 1050100%1
5Z2R_TD6_H_601 74% 8% 0.124 0.9553.19 1.46 7 970100%1
5Z2R_TD6_A_601 73% 7% 0.129 0.9553.06 1.88 7 850100%1
5Z2R_TD6_F_601 70% 8% 0.137 0.9563.05 1.61 6 960100%1
5EJ8_TD6_C_602 99% 15% 0.058 0.9911.92 1.87 5 950100%1
5EJ7_TD6_F_601 97% 11% 0.065 0.982.5 1.67 5 790100%1
5EJ6_TD6_H_601 96% 7% 0.07 0.982.99 1.85 5 890100%1
5EJ4_TD6_B_602 95% 8% 0.075 0.982.79 1.8 5 1050100%1
5Z2P_TD6_F_601 90% 3% 0.095 0.9763.93 2.06 13 1590100%0.957
5EJA_TD6_F_601 84% 7% 0.098 0.9612.83 2.05 5 950100%1