TD6: (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid

TD6 is a Ligand Of Interest in 5Z2U designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2U_TD6_H_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2U_TD6_H_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2U_TD6_H_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5Z2U_TD6_H_601 83% 7% 0.115 0.9742.91 2.03 6 750100%0.952
5Z2U_TD6_D_601 83% 7% 0.116 0.9752.97 1.94 6 980100%0.937
5Z2U_TD6_E_601 75% 8% 0.133 0.9683 1.69 6 1040100%0.954
5Z2U_TD6_B_601 71% 3% 0.14 0.9613.75 2.24 12 920100%0.933
5Z2U_TD6_G_601 67% 6% 0.152 0.9623.05 2.01 7 1010100%0.999
5Z2U_TD6_C_601 64% 7% 0.166 0.9643.16 1.71 7 620100%0.995
5Z2U_TD6_A_601 60% 7% 0.154 0.9413.21 1.68 6 10130100%0.912
5EJ8_TD6_C_602 99% 15% 0.058 0.9911.92 1.87 5 950100%1
5EJ7_TD6_F_601 97% 11% 0.065 0.982.5 1.67 5 790100%1
5EJ6_TD6_H_601 96% 7% 0.07 0.982.99 1.85 5 890100%1
5EJ4_TD6_B_602 95% 8% 0.075 0.982.79 1.8 5 1050100%1
5Z2P_TD6_F_601 90% 3% 0.095 0.9763.93 2.06 13 1590100%0.957
5EJA_TD6_F_601 84% 7% 0.098 0.9612.83 2.05 5 950100%1