UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 6JBR designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
6JBR_UDP_A_502 | 76% | 34% | 0.113 | 0.95 | 0.93 | 1.65 | - | 7 | 0 | 0 | 100% | 1 |
6JBR_UDP_B_502 | 74% | 34% | 0.122 | 0.952 | 0.95 | 1.64 | - | 6 | 0 | 0 | 100% | 1 |
6JBR_UDP_O_502 | 70% | 34% | 0.134 | 0.952 | 0.95 | 1.63 | - | 6 | 0 | 0 | 100% | 1 |
6JBR_UDP_K_502 | 70% | 35% | 0.121 | 0.938 | 0.95 | 1.61 | - | 7 | 0 | 0 | 100% | 1 |
6JBR_UDP_M_502 | 58% | 34% | 0.139 | 0.916 | 0.94 | 1.64 | - | 7 | 0 | 0 | 100% | 1 |
6JBR_UDP_D_502 | 53% | 34% | 0.145 | 0.906 | 0.94 | 1.65 | - | 7 | 1 | 0 | 100% | 1 |
6JBR_UDP_F_502 | 52% | 33% | 0.134 | 0.891 | 0.97 | 1.64 | - | 7 | 2 | 0 | 100% | 1 |
6JBR_UDP_H_502 | 31% | 34% | 0.168 | 0.834 | 0.96 | 1.62 | - | 6 | 1 | 0 | 100% | 1 |
6JBW_UDP_B_900 | 60% | 38% | 0.161 | 0.948 | 0.96 | 1.44 | 1 | 5 | 0 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |