GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 8D0U designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8D0U_GDP_A_401 | 48% | 24% | 0.192 | 0.936 | 1.79 | 1.31 | 5 | 4 | 0 | 0 | 100% | 1 |
8D0Q_GDP_A_402 | 84% | 33% | 0.097 | 0.958 | 1.47 | 1.21 | 4 | 4 | 0 | 0 | 100% | 0.25 |
8D0R_GDP_A_401 | 81% | 25% | 0.091 | 0.941 | 2.07 | 1.04 | 8 | 1 | 0 | 0 | 100% | 0.6 |
8D0S_GDP_A_401 | 54% | 23% | 0.164 | 0.929 | 1.84 | 1.34 | 6 | 3 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |