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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Escherichia coli ATCC 8739"

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Search Summary

This query matches 829 Structures.

Refinements

Structure Determination Methodology

	computational (819)
	experimental (10)

CSM Source Database

AlphaFoldDB (819)

pLDDT Global Quality Score

	50.0 - 70.0 (5)
	70.0 - 90.0 (193)
	> 90.0 (621)

Scientific Name of Source Organism

	Escherichia coli ATCC 8739 (829)
	Escherichia coli K-12 (2)
	Escherichia coli O139:H28 str. E24377A (1)
	synthetic construct (1)

Taxonomy

	Bacteria (829)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (9)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (829)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (1)
	2020 - 2024 (821)

Enzyme Classification Name

	Transferases (174)
	Hydrolases (108)
	Oxidoreductases (72)
	Lyases (66)
	Ligases (40)
	Isomerases (36)
	Translocases (17)

Symmetry Type

	Asymmetric (822)
	Dihedral (6)
	Cyclic (1)

SCOP Classification

Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 829 Structures

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3MJM \| pdb_00003mjm	Download File View File

His257Ala mutant of dihydroorotase from E. coli

Ernberg, K.E., Guss, J.M., Lee, M., Maher, M.J.

To be published

Released	2011-03-02
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	Dihydroorotase (protein)
Unique Ligands	CP, DOR, NCD, ZN

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4B5S \| pdb_00004b5s	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with pyruvate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	3GR, CO, GOL, MG, PO4, PYR

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4B5T \| pdb_00004b5t	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with ketobutyrate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.923 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	2KT, CO, GOL, MG

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4B5U \| pdb_00004b5u	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with pyruvate and succinic semialdehyde

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.913 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	CO, GOL, MG, PYR, SSN

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4B5V \| pdb_00004b5v	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase, HpaI, in complex with 4-hydroxyl-2-ketoheptane-1,7-dioate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.041 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	E8U, GOL, MG, PYR

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4B5W \| pdb_00004b5w	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase R70A mutant, HpaI, in complex with pyruvate

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.792 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	CA, CO, PYR

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4B5X \| pdb_00004b5x	Download File View File

Crystal structures of divalent metal dependent pyruvate aldolase (HpaI), mutant D42A

Coincon, M., Wang, W., Seah, S.Y.K., Sygusch, J.

(2012) J Biological Chem 287: 36208

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE (protein)
Unique Ligands	GOL, PO4

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4XSZ \| pdb_00004xsz	Download File View File

Crystal structure of CBR 9393 bound to Escherichia coli RNA polymerase holoenzyme

Bae, B., Darst, S.A.

(2015) Proc Natl Acad Sci U S A 112: E4178-E4187

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.683 Å
Organisms	Escherichia coli ATCC 8739 Escherichia coli K-12 Escherichia coli O139:H28 str. E24377A
Macromolecule	DNA-directed RNA polymerase subunit alpha (protein) DNA-directed RNA polymerase subunit beta (protein) DNA-directed RNA polymerase subunit beta' (protein) DNA-directed RNA polymerase subunit omega (protein) RNA polymerase sigma factor RpoD (protein)
Unique Ligands	42U, MG, ZN

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6KJ6 \| pdb_00006kj6	Download File View File

cryo-EM structure of Escherichia coli Crl transcription activation complex

Xu, J., Zhang, Y.

(2019) Elife 8:

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Escherichia coli ATCC 8739 Escherichia coli K-12 synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 3
Unique Ligands	MG, ZN

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7P75 \| pdb_00007p75	Download File View File

Re-engineered 2-deoxy-D-ribose-5-phosphate aldolase catalysing asymmetric Michael addition reactions in substrate-free state

Thunnissen, A.M.W.H., Rozeboom, H.J., Kunzendorf, A., Poelarends, G.J.

(2021) ACS Catal 11: 13236-13243

Released	2021-10-27
Method	X-RAY DIFFRACTION 1.23 Å
Organisms	Escherichia coli ATCC 8739
Macromolecule	Deoxyribose-phosphate aldolase (protein)

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AF_AFB1IP32F1	Download File

Computed structure model of 1,4-alpha-glucan branching enzyme GlgB

AlphaFold DB	AF-B1IP32-F1
pLDDT (global)	96.17
Organisms	Escherichia coli ATCC 8739
Macromolecule	1,4-alpha-glucan branching enzyme GlgB (protein)

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AF_AFB1IP33F1	Download File

Computed structure model of Glycogen debranching enzyme

AlphaFold DB	AF-B1IP33-F1
pLDDT (global)	98.03
Organisms	Escherichia coli ATCC 8739
Macromolecule	Glycogen debranching enzyme (protein)

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AF_AFB1IP34F1	Download File

Computed structure model of Glucose-1-phosphate adenylyltransferase

AlphaFold DB	AF-B1IP34-F1
pLDDT (global)	93.2
Organisms	Escherichia coli ATCC 8739
Macromolecule	Glucose-1-phosphate adenylyltransferase (protein)

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AF_AFB1IP35F1	Download File

Computed structure model of Glycogen synthase

AlphaFold DB	AF-B1IP35-F1
pLDDT (global)	97.34
Organisms	Escherichia coli ATCC 8739
Macromolecule	Glycogen synthase (protein)

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AF_AFB1IP41F1	Download File

Computed structure model of Thiosulfate sulfurtransferase GlpE

AlphaFold DB	AF-B1IP41-F1
pLDDT (global)	97.68
Organisms	Escherichia coli ATCC 8739
Macromolecule	Thiosulfate sulfurtransferase GlpE (protein)

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AF_AFB1IP42F1	Download File

Computed structure model of Rhomboid protease GlpG

AlphaFold DB	AF-B1IP42-F1
pLDDT (global)	88.03
Organisms	Escherichia coli ATCC 8739
Macromolecule	Rhomboid protease GlpG (protein)

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AF_AFB1IP46F1	Download File

Computed structure model of RNA 3'-terminal phosphate cyclase

AlphaFold DB	AF-B1IP46-F1
pLDDT (global)	96.83
Organisms	Escherichia coli ATCC 8739
Macromolecule	RNA 3'-terminal phosphate cyclase (protein)

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AF_AFB1IP47F1	Download File

Computed structure model of HTH-type transcriptional regulator MalT

AlphaFold DB	AF-B1IP47-F1
pLDDT (global)	88.86
Organisms	Escherichia coli ATCC 8739
Macromolecule	HTH-type transcriptional regulator MalT (protein)

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AF_AFB1IP51F1	Download File

Computed structure model of Fe/S biogenesis protein NfuA

AlphaFold DB	AF-B1IP51-F1
pLDDT (global)	84.87
Organisms	Escherichia coli ATCC 8739
Macromolecule	Fe/S biogenesis protein NfuA (protein)

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AF_AFB1IP53F1	Download File

Computed structure model of Pimeloyl-[acyl-carrier protein] methyl ester esterase

AlphaFold DB	AF-B1IP53-F1
pLDDT (global)	95.68
Organisms	Escherichia coli ATCC 8739
Macromolecule	Pimeloyl-[acyl-carrier protein] methyl ester esterase (protein)

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AF_AFB1IP55F1	Download File

Computed structure model of Probable [Fe-S]-dependent transcriptional repressor

AlphaFold DB	AF-B1IP55-F1
pLDDT (global)	79.42
Organisms	Escherichia coli ATCC 8739
Macromolecule	Probable [Fe-S]-dependent transcriptional repressor (protein)