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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Paramagnetospirillum magneticum AMB-1"

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This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Ruminococcus bromii L2-63 (8)
	Ruminococcus bromii (6)

Taxonomy

Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (8)
	2.0 - 2.5 (4)

Release Date

2020 - 2024 (14)

Enzyme Classification Name

Hydrolases (6)

Symmetry Type

Asymmetric (14)

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1 to 14 of 14 Structures

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Explore in 3D

7JJT \| pdb_00007jjt	Download File View File

Ruminococcus bromii amylase Amy5 (RBR_07800)

Cerqueira, F., Koropatkin, N.

(2020) Amylase 4: 24-44

Released	2021-06-23
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Ruminococcus bromii
Macromolecule	Alpha-amylase (protein)
Unique Ligands	ACT, CA, EDO, FMT

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7LSA \| pdb_00007lsa	Download File View File

Ruminococcus bromii Amy12 with maltoheptaose

Koropatkin, N.M., Cockburn, D.W., Brown, H.A., Kibler, R.D.

(2021) J Struct Biol 213: 107765-107765

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Ruminococcus bromii
Macromolecule	Pullulanase (protein)
Unique Ligands	CA, GOL, PEG
Unique branched monosaccharides	GLC

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7LSR \| pdb_00007lsr	Download File View File

Ruminococcus bromii Amy12-D392A with maltoheptaose

Koropatkin, N.M., Cockburn, D.W., Brown, H.A., Kibler, R.D.

(2021) J Struct Biol 213: 107765-107765

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Ruminococcus bromii
Macromolecule	Pullulanase (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	BGC, GLC

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7LST \| pdb_00007lst	Download File View File

Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriosyl-maltotriose

Koropatkin, N.M., Cockburn, D.W., Brown, H.A., Kibler, R.D.

(2021) J Struct Biol 213: 107765-107765

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Ruminococcus bromii
Macromolecule	Pullulanase (protein)
Unique Ligands	ACT, CA, GOL, NA
Unique branched monosaccharides	BGC, GLC

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7LSU \| pdb_00007lsu	Download File View File

Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriose

Koropatkin, N.M., Cockburn, D.W., Brown, H.A., Kibler, R.D.

(2021) J Struct Biol 213: 107765-107765

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Ruminococcus bromii
Macromolecule	Pullulanase (protein)
Unique Ligands	ACT, CA, GOL, NA, PEG
Unique branched monosaccharides	BGC, GLC

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7RAW \| pdb_00007raw	Download File View File

Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii

Cerqueira, F.M., Koropatkin, N.M.

(2022) J Biological Chem 298: 101896-101896

Released	2022-04-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Dockerin domain-containing protein (protein)
Unique Ligands	PEG, PGE

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7RFT \| pdb_00007rft	Download File View File

Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii with maltotriose

Koropatkin, N., Cerqueira, F.

(2022) J Biological Chem 298: 101896-101896

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Dockerin domain-containing protein (protein)
Unique Ligands	CL, EDO, ZN
Unique branched monosaccharides	GLC

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7RPY \| pdb_00007rpy	Download File View File

X25-2 domain of Sca5 from Ruminococcus bromii

Cerqueira, F., Koropatkin, N.

(2022) J Biological Chem 298: 101896-101896

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Cohesin-containing protein (protein)
Unique Ligands	ACT, GOL
Unique branched monosaccharides	GLC

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7URP \| pdb_00007urp	Download File View File

Second cohesin module from Sca5 of Ruminococcus bromii

Cerqueira, F., Koropatkin, N.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Ribonucleases G and E (protein)
Unique Ligands	CA, EDO, NA

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7UVG \| pdb_00007uvg	Download File View File

First cohesin of Sca5 from Ruminococcus bromii

Cerqueira, F., Koropatkin, N.

To be published

Released	2023-05-03
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Coh5 (protein)
Unique Ligands	EDO, IOD

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7UWU \| pdb_00007uwu	Download File View File

Starch adherence system protein 6 (Sas6)

Photenhauer, A.L., Koropatkin, N.M.

(2024) Nat Struct Mol Biol 31: 255-265

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Starch Adherence System protein 6 (Sas6) (protein)
Unique Ligands	CA, EDO, SCN

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7UWV \| pdb_00007uwv	Download File View File

CBM74 from Ruminococcus bromii Sas6 with maltodecaose

Photenhauer, A.L., Koropatkin, N.M.

(2024) Nat Struct Mol Biol 31: 255-265

Released	2023-06-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	CBM74 (protein)
Unique Ligands	CA, NA
Unique branched monosaccharides	GLC

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7UWW \| pdb_00007uww	Download File View File

Sas6 with alpha-cyclodextrin

Photenhauer, A.L., Koropatkin, N.M.

(2024) Nat Struct Mol Biol 31: 255-265

Released	2023-06-14
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Ruminococcus bromii L2-63
Macromolecule	Starch Adherence System protein 6 (Sas6) (protein)
Unique Ligands	CA, EDO, SCN
Unique branched monosaccharides	GLC

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9FZ2 \| pdb_00009fz2	Download File View File

Crystal structure of Amylase 5 (Amy5) from Ruminococcus bromii covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

Pickles, I.B., Moroz, O., Davies, G.

(2025) Angew Chem Int Ed Engl 64: e202415219-e202415219

Released	2024-12-11
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Ruminococcus bromii
Macromolecule	Alpha-amylase (protein)
Unique Ligands	A1IHI, CA, PBW
Unique branched monosaccharides	GLC

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

7JJT | pdb_00007jjt

Ruminococcus bromii amylase Amy5 (RBR_07800)

7LSA | pdb_00007lsa

Ruminococcus bromii Amy12 with maltoheptaose

7LSR | pdb_00007lsr

Ruminococcus bromii Amy12-D392A with maltoheptaose

7LST | pdb_00007lst

Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriosyl-maltotriose

7LSU | pdb_00007lsu

Ruminococcus bromii Amy12-D392A with 63-a-D-glucosyl-maltotriose

7RAW | pdb_00007raw

Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii

7RFT | pdb_00007rft

Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii with maltotriose

7RPY | pdb_00007rpy

X25-2 domain of Sca5 from Ruminococcus bromii

7URP | pdb_00007urp

Second cohesin module from Sca5 of Ruminococcus bromii

7UVG | pdb_00007uvg

First cohesin of Sca5 from Ruminococcus bromii

7UWU | pdb_00007uwu

Starch adherence system protein 6 (Sas6)

7UWV | pdb_00007uwv

CBM74 from Ruminococcus bromii Sas6 with maltodecaose

7UWW | pdb_00007uww

Sas6 with alpha-cyclodextrin

9FZ2 | pdb_00009fz2

Crystal structure of Amylase 5 (Amy5) from Ruminococcus bromii covalently bound to alpha-1,6 branched pseudo-trisaccharide activity-based probe

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

7JJT | pdb_00007jjt

7LSA | pdb_00007lsa

7LSR | pdb_00007lsr

7LST | pdb_00007lst

7LSU | pdb_00007lsu

7RAW | pdb_00007raw

7RFT | pdb_00007rft

7RPY | pdb_00007rpy

7URP | pdb_00007urp

7UVG | pdb_00007uvg

7UWU | pdb_00007uwu

7UWV | pdb_00007uwv

7UWW | pdb_00007uww

9FZ2 | pdb_00009fz2