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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Azarkan, M."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Ananas comosus (10)
	Ficus carica (6)
	Carica papaya (2)

Taxonomy

Eukaryota (18)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (8)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (2)
	2015 - 2019 (7)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (1)

Symmetry Type

	Asymmetric (15)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	All beta proteins (3)

AllSelected

1 to 18 of 18 Structures

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2FAW \| pdb_00002faw	Download File View File

crystal structure of papaya glutaminyl cyclase

Wintjens, R., Belrhali, H., Clantin, B., Azarkan, M., Bompard, C., Baeyens-Volant, D., Looze, Y., Villeret, V.

(2006) J Mol Biology 357: 457-470

Released	2006-10-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Carica papaya
Macromolecule	glutamine cyclotransferase (protein)
Unique Ligands	ACY, TRS, ZN
Unique branched monosaccharides	BMA, FUC, NAG

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3CQL \| pdb_00003cql	Download File View File

Crystal Structure of GH family 19 chitinase from Carica papaya

Huet, J., Rucktoa, P., Clantin, B., Azarkan, M., Looze, Y., Villeret, V., Wintjens, R.

(2008) Biochemistry 47: 8283-8291

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Carica papaya
Macromolecule	Endochitinase (protein)
Unique Ligands	GOL, NAG, NDG, SO4

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4YYQ \| pdb_00004yyq	Download File View File

Ficin A

Azarkan, M., Baeyens-Volant, D., Loris, R.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.594 Å
Organisms	Ficus carica
Macromolecule	Ficin isoform A (protein)

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4YYR \| pdb_00004yyr	Download File View File

Ficin B crystal form I

Azarkan, M., Baeyens-Volant, D., Loris, R.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.349 Å
Organisms	Ficus carica
Macromolecule	Ficin B (protein)
Unique Ligands	SO4

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4YYS \| pdb_00004yys	Download File View File

Ficin B crystal form II

Azarkan, M., Baeyens-Volant, D., Loris, R.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Ficus carica
Macromolecule	Ficin isoform B (protein)
Unique Ligands	PO4

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4YYV \| pdb_00004yyv	Download File View File

Ficin isoform C crystal form II

Azarkan, M., Baeyens-Volant, D., Loris, R.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.902 Å
Organisms	Ficus carica
Macromolecule	Ficin isoform C (protein)
Unique Ligands	16P, SO4

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6FLW \| pdb_00006flw	Download File View File

Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus.

Azarkan, M., Herman, R., El Mahyaoui, R., Sauvage, E., Vanden Broeck, A., Charlier, P.

(2018) Sci Rep 8: 11508-11508

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ananas comosus
Macromolecule	Jacalin-like lectin (protein)
Unique Ligands	CIT

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6FLY \| pdb_00006fly	Download File View File

Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus, in complex with mannose.

Azarkan, M., Herman, R., El Mahyaoui, R., Sauvage, E., Vanden Broeck, A., Charlier, P.

(2018) Sci Rep 8: 11508-11508

Released	2018-08-15
Method	X-RAY DIFFRACTION 2.749 Å
Organisms	Ananas comosus
Macromolecule	Jacalin-like lectin (protein)
Unique Ligands	MAN

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6FLZ \| pdb_00006flz	Download File View File

Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus, in complex with methyl-mannose.

Azarkan, M., Herman, R., El Mahyaoui, R., Sauvage, E., Vanden Broeck, A., Charlier, P.

(2018) Sci Rep 8: 11508-11508

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.895 Å
Organisms	Ananas comosus
Macromolecule	Jacalin-like lectin (protein)
Unique Ligands	CIT, MMA

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6Y6L \| pdb_00006y6l	Download File View File

Structure the ananain protease from Ananas comosus with a thiomethylated catalytic cysteine

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Ananas comosus
Macromolecule	Ananain (protein)
Unique Ligands	GOL, SO4

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6YCB \| pdb_00006ycb	Download File View File

Structure the ananain protease from Ananas comosus covalently bound to with the E64 inhibitor

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.257 Å
Organisms	Ananas comosus
Macromolecule	Ananain (protein)
Unique Ligands	GOL, SO4, TLA

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6YCC \| pdb_00006ycc	Download File View File

Structure the ananain protease from Ananas comosus covalently bound to the E64 inhibitor

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Ananas comosus
Macromolecule	Ananain (protein)
Unique Ligands	E64, GOL, SO4

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6YCD \| pdb_00006ycd	Download File View File

Structure the ananain protease from Ananas comosus covalently bound to the TLCK inhibitor

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Ananas comosus
Macromolecule	Ananain (protein)
Unique Ligands	GOL, SO4, TCK

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6YCE \| pdb_00006yce	Download File View File

Structure the bromelain protease from Ananas comosus with a thiomethylated active cysteine

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Ananas comosus
Macromolecule	FBSB (protein)
Unique Ligands	IPA, NAG
Unique branched monosaccharides	BMA, FUC, NAG, XYS

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6YCF \| pdb_00006ycf	Download File View File

Structure the bromelain protease from Ananas comosus in complex with the E64 inhibitor

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Ananas comosus
Macromolecule	FBSB (protein)
Unique Ligands	CIT, E64, IPA, NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYS

Explore in 3D

6YCG \| pdb_00006ycg	Download File View File

Structure the bromelain protease from Ananas comosus in complex with the TLCK inhibitor

Azarkan, M., Charlier, P., Herman, R., Delbrassine, F., Sauvage, E., M Rabet, N., Calvo Esposito, R., Kerff, F.

(2020) Sci Rep 10: 19570-19570

Released	2020-11-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Ananas comosus
Macromolecule	FBSB (protein)
Unique Ligands	CIT, IPA, TCK
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYS

Explore in 3D

8R76 \| pdb_00008r76	Download File View File

Ficin C crystal form I

Loris, R., Baeyens-Volant, D., Azarkan, M., Kerff, F.

To be published

Released	2024-12-04
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Ficus carica
Macromolecule	Ficin 1b (protein)
Unique Ligands	GOL, MES, SO4

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8R78 \| pdb_00008r78	Download File View File

Ficin D cystein protease

Loris, R., Baeyens-Volant, D., Azarkan, M., Kerff, F.

To be published

Released	2024-12-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Ficus carica
Macromolecule	Ficin 3 (protein)
Unique Ligands	ACT, GOL, SO4

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2FAW | pdb_00002faw

crystal structure of papaya glutaminyl cyclase

3CQL | pdb_00003cql

Crystal Structure of GH family 19 chitinase from Carica papaya

4YYQ | pdb_00004yyq

Ficin A

4YYR | pdb_00004yyr

Ficin B crystal form I

4YYS | pdb_00004yys

Ficin B crystal form II

4YYV | pdb_00004yyv

Ficin isoform C crystal form II

6FLW | pdb_00006flw

Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus.

6FLY | pdb_00006fly

Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus, in complex with mannose.

6FLZ | pdb_00006flz

Structure of AcmJRL, a mannose binding jacalin related lectin from Ananas comosus, in complex with methyl-mannose.

6Y6L | pdb_00006y6l

Structure the ananain protease from Ananas comosus with a thiomethylated catalytic cysteine

6YCB | pdb_00006ycb

Structure the ananain protease from Ananas comosus covalently bound to with the E64 inhibitor

6YCC | pdb_00006ycc

Structure the ananain protease from Ananas comosus covalently bound to the E64 inhibitor

6YCD | pdb_00006ycd

Structure the ananain protease from Ananas comosus covalently bound to the TLCK inhibitor

6YCE | pdb_00006yce

Structure the bromelain protease from Ananas comosus with a thiomethylated active cysteine

6YCF | pdb_00006ycf

Structure the bromelain protease from Ananas comosus in complex with the E64 inhibitor

6YCG | pdb_00006ycg

Structure the bromelain protease from Ananas comosus in complex with the TLCK inhibitor

8R76 | pdb_00008r76

Ficin C crystal form I

8R78 | pdb_00008r78

Ficin D cystein protease

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2FAW | pdb_00002faw

3CQL | pdb_00003cql

4YYQ | pdb_00004yyq

4YYR | pdb_00004yyr

4YYS | pdb_00004yys

4YYV | pdb_00004yyv

6FLW | pdb_00006flw

6FLY | pdb_00006fly

6FLZ | pdb_00006flz

6Y6L | pdb_00006y6l

6YCB | pdb_00006ycb

6YCC | pdb_00006ycc

6YCD | pdb_00006ycd

6YCE | pdb_00006yce

6YCF | pdb_00006ycf

6YCG | pdb_00006ycg

8R76 | pdb_00008r76

8R78 | pdb_00008r78