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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Barandun, J."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (24)
	Saccharomyces cerevisiae (6)
	Saccharomyces cerevisiae BY4741 (1)
	Thermochaetoides thermophila (1)

Taxonomy

Eukaryota (31)

Experimental Method

	ELECTRON MICROSCOPY (26)
	X-RAY DIFFRACTION (5)

Polymer Entity Type

	Protein (31)
	RNA (28)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	3.0 - 3.5 (3)
	3.5 - 4.0 (9)
	4.0 - 4.5 (3)
	> 4.5 (12)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (5)
	2020 - 2024 (21)

Enzyme Classification Name

	Transferases (31)
	Hydrolases (9)

Symmetry Type

	Asymmetric (28)
	Cyclic (3)

SCOP Classification

Alpha and beta proteins (a/b) (3)

AllSelected

1 to 25 of 31 Structures

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2V3J	Download File View File

The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase

Leulliot, N., Bohnsack, M.T., Graille, M., Tollervey, D., Van Tilbeurgh, H.

(2008) Nucleic Acids Res 36: 629

Released	2007-12-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ESSENTIAL FOR MITOTIC GROWTH 1 (protein)
Unique Ligands	SO4

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2V3K	Download File View File

The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase

Leulliot, N., Bohnsack, M.T., Graille, M., Tollervey, D., VanTilbeurgh, H.

(2008) Nucleic Acids Res 36: 629

Released	2007-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ESSENTIAL FOR MITOTIC GROWTH 1 (protein)
Unique Ligands	SAM, SO4

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3OII	Download File View File

Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine

Thomas, S.R., Szyk, A., LaRonde-LeBlanc, N.

(2011) Nucleic Acids Res 39: 2445-2457

Released	2010-12-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Essential for mitotic growth 1 (protein)
Unique Ligands	GOL, SAH

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3OIJ	Download File View File

Crystal structure of Saccharomyces Cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 2 molecules of cognate RNA

Thomas, S.R., LaRonde-LeBlanc, N.

(2011) Nucleic Acids Res 39: 2445-2457

Released	2010-12-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Essential for mitotic growth 1 (protein) 5'-R(GPGPGPCPUPUPCPAPAPCPGPCPCPC)-3' (nucleic acid)
Unique Ligands	MG, SAH

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3OIN	Download File View File

Crystal structure of Saccharomyces cerevisiae Nep1/Emg1 bound to S-adenosylhomocysteine and 1 molecule of cognate RNA

Thomas, S.R., LaRonde-LeBlanc, N.

(2011) Nucleic Acids Res 39: 2445-2457

Released	2010-12-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ribosomal RNA small subunit methyltransferase NEP1 (protein) 5'-R(GPGPGPCPUPUPCPAPAPCPGPCPCPC)-3' (nucleic acid)
Unique Ligands	CL, GOL, MG, SAH

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5JPQ	Download File View File

Cryo-EM structure of the 90S pre-ribosome

Turk, M., Cheng, J., Berninghausen, O., Kornprobst, M., Flemming, D., Kos-Braun, I.C., Kos, M., Thoms, M., Hurt, E., Beckmann, R.

(2016) Cell 166: 380-393

Released	2016-07-27
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Saccharomyces cerevisiae S288C Thermochaetoides thermophila
Macromolecule	Unique protein chains: 34 Unique nucleic acid chains: 2

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5TZS	Download File View File

Architecture of the yeast small subunit processome

Chaker-Margot, M., Barandun, J., Hunziker, M., Klinge, S.

(2017) Science 355:

Released	2016-12-21
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 47 Unique nucleic acid chains: 6

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5WLC	Download File View File

The complete structure of the small subunit processome

Barandun, J., Chaker-Margot, M., Hunziker, M., Klinge, S.

(2017) Nat Struct Mol Biol 24: 944-953

Released	2017-09-27
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae BY4741
Macromolecule	Unique protein chains: 63 Unique nucleic acid chains: 3
Unique Ligands	ZN

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5WYJ	Download File View File

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Ye, K., Zhu, X., Sun, Q.

(2017) Elife 6:

Released	2017-03-29
Method	ELECTRON MICROSCOPY 8.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 58 Unique nucleic acid chains: 3

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5WYK	Download File View File

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Ye, K., Zhu, X., Sun, Q.

(2017) Elife 6:

Released	2017-03-29
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 3

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6KE6	Download File View File

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Du, Y., Ye, K., An, W.

To be published

Released	2020-08-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 64 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQP	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 66 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQQ	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 63 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQR	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 61 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQS	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 73 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQT	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 53 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQU	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 65 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6LQV	Download File View File

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Du, Y., Ye, K.

(2020) Science 369: 1477-1481

Released	2020-09-16
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6ZQA	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala)

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 54 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6ZQB	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 64 Unique nucleic acid chains: 3
Unique Ligands	GTP, ZN

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6ZQC	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 64 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6ZQD	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 60 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

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6ZQE	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 7.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 56 Unique nucleic acid chains: 3
Unique Ligands	ZN

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6ZQF	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 38 Unique nucleic acid chains: 3
Unique Ligands	ZN

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6ZQG	Download File View File

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Cheng, J., Lau, B., Venuta, G.L., Berninghausen, O., Hurt, E., Beckmann, R.

(2020) Science 369: 1470-1476

Released	2020-09-23
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 33 Unique nucleic acid chains: 3
Unique Ligands	GTP, MG, ZN

1 to 25 of 31 Structures

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