RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Baranovskiy, A.G."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Enquatrovirus N4 (3)
	Enterobacteria phage N4 (3)
	Homo sapiens (2)
	synthetic construct (2)
	Haemophilus influenzae (1)

Taxonomy

	Duplodnaviria (6)
	Eukaryota (2)
	other sequences (2)
	Bacteria (1)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

	Protein (9)
	DNA (6)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

AllSelected

1 to 10 of 10 Structures

Page 1 of 1

Sort by

Explore in 3D

3C2P	Download File View File

X-ray crystal structure of the N4 mini-vRNAP P1 promoter complex

Gleghorn, M.L., Murakami, K.S.

(2008) Mol Cell 32: 707-717

Released	2008-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterobacteria phage N4
Macromolecule	Virion RNA polymerase (protein) P1 Promoter DNA (nucleic acid)

Explore in 3D

3C3L	Download File View File

X-ray crystal structure of the N4 mini-vRNAP P2 promoter complex

Gleghorn, M.L., Murakami, K.S.

(2008) Mol Cell 32: 707-717

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Enterobacteria phage N4
Macromolecule	Virion RNA polymerase (protein) P2 Promoter DNA (nucleic acid)

Explore in 3D

3C46	Download File View File

X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2

Gleghorn, M.L., Murakami, K.S.

(2008) Mol Cell 32: 707-717

Released	2008-12-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterobacteria phage N4
Macromolecule	Virion RNA polymerase (protein) P2_7a Promoter DNA (nucleic acid)
Unique Ligands	2HP

Explore in 3D

3Q22	Download File View File

X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I

Gleghorn, M.L., Murakami, K.S.

(2011) Proc Natl Acad Sci U S A 108: 3566-3571

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Enquatrovirus N4
Macromolecule	Virion RNA polymerase (protein) DNA (5'-D(TPGPCPCPTPCPCPCPAPGPGPCPAPTPCPCPAPAPAPAPGPAPAPGPCPGPGPAPGPCPTPTPCPTPTPC)-3') (nucleic acid)
Unique Ligands	2HP, GTP, MG

Explore in 3D

3Q23	Download File View File

X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II

Gleghorn, M.L., Murakami, K.S.

(2011) Proc Natl Acad Sci U S A 108: 3566-3571

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enquatrovirus N4
Macromolecule	Virion RNA polymerase (protein) DNA (5'-D(TPGPCPCPTPCPCPCPAPGPGPCPAPTPCPCPAPAPAPAPGPAPAPGPCPGPGPAPGPCPTPTPCPTPTPC)-3') (nucleic acid)
Unique Ligands	2HP, G2P, MN

Explore in 3D

3Q24	Download File View File

X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex

Gleghorn, M.L., Murakami, K.S.

(2011) Proc Natl Acad Sci U S A 108: 3566-3571

Released	2011-02-16
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Enquatrovirus N4 synthetic construct
Macromolecule	Virion RNA polymerase (protein) DNA (5'-D(TPGPCPCPTPCPCPCPAPGPGPCPAPTPCPCPAPAPAPAPGPAPAPGPCPGPGPAPGPCPTPTPCPTPTPC)-3') (nucleic acid)
Unique Ligands	2HP, 5GP, GTP, POP

Explore in 3D

4DKK	Download File View File

The X-ray Crystal Structure of the Human STAU1 SSM-'RBD'5 Domain-Swapped Dimer

Gleghorn, M.L.

(2013) Nat Struct Mol Biol 20: 515-524

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-binding protein Staufen homolog 1 (protein)
Unique Ligands	CL, FLC

Explore in 3D

5K8H	Download File View File

The X-ray crystal structure of a parallel poly(rA) double helix generated by rA7 at acidic pH

Gleghorn, M.L., Maquat, L.E.

(2016) Nucleic Acids Res 44: 8417-8424

Released	2016-07-06
Method	X-RAY DIFFRACTION 1.069 Å
Organisms	synthetic construct
Macromolecule	RNA 7-mer (nucleic acid)
Unique Ligands	NH4

Explore in 3D

6D0Y	Download File View File

X-ray Crystal Structure of PGC-1beta C-terminus bound to the CBP80-CBP20 Cap Binding Complex

Gleghorn, M.L., Maquat, L.E.

(2018) Genes Dev 32: 555-567

Released	2018-04-25
Method	X-RAY DIFFRACTION 2.676 Å
Organisms	Homo sapiens
Macromolecule	Nuclear cap-binding protein subunit 1 (protein) Nuclear cap-binding protein subunit 2 (protein) Peroxisome proliferator-activated receptor gamma coactivator 1-beta (protein)
Unique Ligands	GTA, MG

Explore in 3D

8CWP	Download File View File

X-ray crystal structure of NTHi Protein D bound to a putative glycerol moiety

Jones, S.P., Cook, K.H., Holmquist, M.L., Almekinder, L., DeLaney, A., Labbe, N., Perdue, J., Jackson, N., Charles, R., Pichichero, M., Kaur, R., Michel, L., Gleghorn, M.L.

(2023) Proteins 91: 161-170

Released	2022-09-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	Glycerophosphoryl diester phosphodiesterase (protein)
Unique Ligands	GOL, NA

1 to 10 of 10 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type