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235,458 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Carpentier, P."

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Search Summary

This query matches 91 Structures.

Refinements

Structure Determination Methodology

experimental (91)

Scientific Name of Source Organism

	Aspergillus flavus (10)
	Nitratidesulfovibrio vulgaris str. Hildenborough (8)
	Escherichia coli K-12 (7)
	Pyrococcus abyssi (7)
	Corynebacterium diphtheriae (5)
	Gallus gallus (5)
	Mus musculus (5)
	Bacillus thermoproteolyticus (4)
	Anthomedusae sp. DC-2005 (3)
	Desulfarculus baarsii (3)

More...

Taxonomy

	Bacteria (44)
	Eukaryota (36)
	Archaea (11)

Experimental Method

X-RAY DIFFRACTION (91)

Polymer Entity Type

Protein (91)

Refinement Resolution (Å)

	1.0 - 1.5 (14)
	1.5 - 2.0 (43)
	2.0 - 2.5 (28)
	2.5 - 3.0 (6)

Release Date

	2005 - 2009 (17)
	2010 - 2014 (15)
	2015 - 2019 (20)
	2020 - 2024 (36)
	2025 - 2029 (3)

Enzyme Classification Name

	Oxidoreductases (36)
	Hydrolases (25)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (4)
	PDBTM (4)
	mpstruc (4)
	OPM (1)

Symmetry Type

	Asymmetric (53)
	Cyclic (21)
	Dihedral (16)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (27)
	Alpha and beta proteins (a/b) (18)
	Multi-domain proteins (alpha and beta) (8)
	All alpha proteins (12)
	All beta proteins (4)
	Artifacts (10)
	Small proteins (3)

AllSelected

1 to 25 of 91 Structures

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1YR6 \| pdb_00001yr6	Download File View File

PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)

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1YR7 \| pdb_00001yr7	Download File View File

PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)
Unique Ligands	GSP

Explore in 3D

1YR8 \| pdb_00001yr8	Download File View File

PAB0955 crystal structure : a GTPase in GTP bound form from Pyrococcus abyssi

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)
Unique Ligands	GTP

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1YR9 \| pdb_00001yr9	Download File View File

PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)
Unique Ligands	GDP, PO4

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1YRA \| pdb_00001yra	Download File View File

PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)
Unique Ligands	GDP

Explore in 3D

1YRB \| pdb_00001yrb	Download File View File

PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2006-02-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)
Unique Ligands	GDP, MG

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2JI1 \| pdb_00002ji1	Download File View File

X-ray structure of wild-type superoxide reductase from Desulfoarculus baarsii

Katona, G., Carpentier, P., Niviere, V., Amara, P., Adam, V., Ohana, J., Tsanov, N., Bourgeois, D.

(2007) Science 316: 449-453

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Desulfarculus baarsii
Macromolecule	Desulfoferrodoxin (protein)
Unique Ligands	CA, FE, FE2

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2JI2 \| pdb_00002ji2	Download File View File

X-ray structure of E114A mutant of superoxide reductase from Desulfoarculus baarsii in the native, reduced form

Katona, G., Carpentier, P., Niviere, V., Amara, P., Adam, V., Ohana, J., Tsanov, N., Bourgeois, D.

(2007) Science 316: 449-453

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Desulfarculus baarsii
Macromolecule	Desulfoferrodoxin (protein)
Unique Ligands	CA, FE, FE2, NO3

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2JI3 \| pdb_00002ji3	Download File View File

X-ray structure of the iron-peroxide intermediate of superoxide reductase (E114A mutant) from Desulfoarculus baarsii

Katona, G., Carpentier, P., Niviere, V., Amara, P., Adam, V., Ohana, J., Tsanov, N., Bourgeois, D.

(2007) Science 316: 449-453

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Desulfarculus baarsii
Macromolecule	Desulfoferrodoxin (protein)
Unique Ligands	CA, FE, NO3, PER

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2OXR \| pdb_00002oxr	Download File View File

PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi (after GTP hydrolysis)

Gras, S., Carpentier, P., Armengaud, J., Housset, D.

(2007) EMBO Rep 8: 569-575

Released	2007-04-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus abyssi
Macromolecule	ATP(GTP)binding protein (protein)
Unique Ligands	GDP, MG

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2V3Q \| pdb_00002v3q	Download File View File

Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein

Morales, R., Berna, A., Carpentier, P., Elias, M., Contreras-Martel, C., Renault, F., Nicodeme, M., Chesne-Seck, M.-L., Bernier, F., Dupuy, J., Schaeffer, C., Diemer, H., Van Dorsselaer, A., Fontecilla, J.C., Masson, P., Rochu, D., Chabriere, E.

(2008) Proteins 71: 1708

Released	2008-07-22
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	HUMAN PHOSPHATE BINDING PROTEIN (protein)
Unique Ligands	EDO, GOL, PO4

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2WHS \| pdb_00002whs	Download File View File

Fluorescent Protein mKeima at pH 3.8

Violot, S., Carpentier, P., Blanchoin, L., Bourgeois, D.

(2009) J Am Chem Soc 131: 10356

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Montipora sp. 20
Macromolecule	LARGE STOKES SHIFT FLUORESCENT PROTEIN (protein)
Unique Ligands	SO4

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2WHT \| pdb_00002wht	Download File View File

Fluorescent Protein mKeima at pH 5.6

Violot, S., Carpentier, P., Blanchoin, L., Bourgeois, D.

(2009) J Am Chem Soc 131: 10356

Released	2009-08-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Montipora sp. 20
Macromolecule	LARGE STOKES SHIFT FLUORESCENT PROTEIN (protein)

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2WHU \| pdb_00002whu	Download File View File

Fluorescent Protein mKeima at pH 8.0

Violot, S., Carpentier, P., Blanchoin, L., Bourgeois, D.

(2009) J Am Chem Soc 131: 10356

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Montipora sp. 20
Macromolecule	LARGE STOKES SHIFT FLUORESCENT PROTEIN (protein)

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2WIQ \| pdb_00002wiq	Download File View File

Fluorescent protein KillerRed in the native state

Carpentier, P., Violot, S., Blanchoin, L., Bourgeois, D.

(2009) FEBS Lett 583: 2839

Released	2009-08-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Anthomedusae sp. DC-2005
Macromolecule	KILLERRED (protein)
Unique Ligands	NA, SO4

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2WIS \| pdb_00002wis	Download File View File

Fluorescent protein KillerRed in the bleached state

Carpentier, P., Violot, S., Blanchoin, L., Bourgeois, D.

(2009) FEBS Lett 583: 2839

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Anthomedusae sp. DC-2005
Macromolecule	KILLERRED (protein)
Unique Ligands	NA

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2XBR \| pdb_00002xbr	Download File View File

Raman crystallography of Hen White Egg Lysozyme - Low X-ray dose (0.2 MGy)

Carpentier, P., Royant, A., Weik, M., Bourgeois, D.

(2010) Structure 18: 1410

Released	2010-11-24
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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2XBS \| pdb_00002xbs	Download File View File

Raman crystallography of Hen White Egg Lysozyme - High X-ray dose (16 MGy)

Carpentier, P., Royant, A., Weik, M., Bourgeois, D.

(2010) Structure 18: 1410

Released	2010-11-24
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME C (protein)
Unique Ligands	CL

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3HZ8 \| pdb_00003hz8	Download File View File

Crystal structure of the oxidized T176V DsbA1 mutant

Lafaye, C., Iwema, T., Carpentier, P., Jullian-Binard, C., Serre, L.

(2009) J Mol Biology 392: 952-966

Released	2009-08-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Neisseria meningitidis MC58
Macromolecule	Thiol:disulfide interchange protein DsbA (protein)

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3MVW \| pdb_00003mvw	Download File View File

X-ray structure of a "NikA+Iron complex" hybrid, NikA/1

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	ACT, BHZ, CL, FE, GOL, SO4

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3MVX \| pdb_00003mvx	Download File View File

X-ray structure of the reduced NikA/1 hybrid, NikA/1-Red

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	ACT, BHZ, CL, DTU, DTV, FE2, GOL, SO4

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3MVY \| pdb_00003mvy	Download File View File

X-ray structure of the diatomic oxo-intermediate NikA/1-Int', prior hydroxylation

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	ACT, BHZ, CL, FE, GOL, PER, SO4

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3MVZ \| pdb_00003mvz	Download File View File

X-ray structure of the (hydro)peroxo intermediate NikA/1-Int", after monohydroxylation of the iron complex

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	ACT, BHN, FE, GOL, PER, SO4

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3MW0 \| pdb_00003mw0	Download File View File

X-ray structure of the doubly hydroxylated iron complex-NikA species, NikA1/O2

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	BHR, DTD, FE

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3MZ9 \| pdb_00003mz9	Download File View File

X-ray structure of NikA in complex with HBED

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	ACT, BHN, CL, DTD, FE, GOL, SO4

1 to 25 of 91 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1YR6 | pdb_00001yr6

1YR7 | pdb_00001yr7

1YR8 | pdb_00001yr8

1YR9 | pdb_00001yr9

1YRA | pdb_00001yra

1YRB | pdb_00001yrb

2JI1 | pdb_00002ji1

2JI2 | pdb_00002ji2

2JI3 | pdb_00002ji3

2OXR | pdb_00002oxr

2V3Q | pdb_00002v3q

2WHS | pdb_00002whs

2WHT | pdb_00002wht

2WHU | pdb_00002whu

2WIQ | pdb_00002wiq

2WIS | pdb_00002wis

2XBR | pdb_00002xbr

2XBS | pdb_00002xbs

3HZ8 | pdb_00003hz8

3MVW | pdb_00003mvw

3MVX | pdb_00003mvx

3MVY | pdb_00003mvy

3MVZ | pdb_00003mvz

3MW0 | pdb_00003mw0

3MZ9 | pdb_00003mz9