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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Chaugule, V.K."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Homo sapiens (9)
	synthetic construct (1)

Taxonomy

	Eukaryota (9)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (9)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (1)

Enzyme Classification Name

	Transferases (8)
	Ligases (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Artifacts (1)

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1 to 9 of 9 Structures

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5C1Z \| pdb_00005c1z	Download File View File

Parkin (UblR0RBR)

kumar, A., Aguirre, J.D., Condos, T.E.C., Martinez-Torres, R.J., Chaugule, V.K., Toth, R., Sundaramoorthy, R., Mercier, P., Knebel, A., Spratt, D.E., Barber, K.R., Shaw, G.S., Walden, H.

(2015) EMBO J 34: 2506-2521

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	CL, GOL, SO4, ZN

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5C23 \| pdb_00005c23	Download File View File

Parkin (S65DUblR0RBR)

Kumar, A., Aguirre, J.D., Condos, T.E.C., Martinez-Torres, R.J., Chaugule, V.K., Toth, R., Sundaramoorthy, R., Mercier, P., Knebel, A., Spratt, D.E., Barber, K.R., Shaw, G.S., Walden, H.

(2015) EMBO J 34: 2506-2521

Released	2015-07-29
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	CL, GOL, SO4, ZN

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5N2W \| pdb_00005n2w	Download File View File

WT-Parkin and pUB complex

Kumar, A., Chaugule, V.K., Johnson, C., Toth, R., Sundaramoorthy, R., Knebel, A., Walden, H.

(2017) Nat Struct Mol Biol 24: 475-483

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	CL, TMO, ZN

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5N38 \| pdb_00005n38	Download File View File

S65DParkin and pUB complex

Kumar, A., Chaugule, V.K., Johnson, C., Toth, R., Sundaramoorthy, R., Knebel, A., Walden, H.

(2017) Nat Struct Mol Biol 24: 475-483

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin (protein) Polyubiquitin-B (protein)
Unique Ligands	CL, PEG, ZN

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5NGZ \| pdb_00005ngz	Download File View File

Ube2T in complex with fragment EM04

Morreale, F.E., Bortoluzzi, A., Chaugule, V.K., Arkinson, C., Walden, H., Ciulli, A.

(2017) J Med Chem 60: 4093-4098

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 T (protein)
Unique Ligands	2BG

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5OJJ \| pdb_00005ojj	Download File View File

Crystal structure of the Zn-bound ubiquitin-conjugating enzyme Ube2T

Morreale, F.E., Testa, A., Chaugule, V.K., Bortoluzzi, A., Ciulli, A., Walden, H.

(2017) J Med Chem 60: 8183-8191

Released	2017-10-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 T (protein)
Unique Ligands	ACT, TRS, ZN

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6N13 \| pdb_00006n13	Download File View File

UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin

Condos, T.E.C., Dunkerley, K.M., Freeman, E.A., Barber, K.R., Aguirre, J.D., Chaugule, V.K., Xiao, Y., Konermann, L., Walden, H., Shaw, G.S.

(2018) EMBO J 37:

Released	2018-11-28
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase parkin (protein) Ubiquitin-conjugating enzyme E2 L3 (protein) phosphoubiquitin (protein) ubiquitin (protein)
Unique Ligands	ZN

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6R75 \| pdb_00006r75	Download File View File

Crystal structure of human Ube2T E54R mutant

Chaugule, V.K., Rennie, M.L., Walden, H., Arkinson, C., Kamarainen, O., Toth, R.

(2020) Nat Chem Biol 16: 291-301

Released	2019-10-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin-conjugating enzyme E2 T (protein)

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7ZF1 \| pdb_00007zf1	Download File View File

Structure of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA

Lemonidis, K., Rennie, M.L., Arkinson, C., Streetley, J., Clarke, M., Chaugule, V.K., Walden, H.

(2023) EMBO J 42: e111898-e111898

Released	2022-11-16
Method	ELECTRON MICROSCOPY 4.14 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Fanconi anemia group D2 protein (protein) Fanconi anemia group I protein (protein) Ubiquitin-60S ribosomal protein L40 (protein) DNA (61-MER) (nucleic acid)

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5C1Z | pdb_00005c1z

Parkin (UblR0RBR)

5C23 | pdb_00005c23

Parkin (S65DUblR0RBR)

5N2W | pdb_00005n2w

WT-Parkin and pUB complex

5N38 | pdb_00005n38

S65DParkin and pUB complex

5NGZ | pdb_00005ngz

Ube2T in complex with fragment EM04

5OJJ | pdb_00005ojj

Crystal structure of the Zn-bound ubiquitin-conjugating enzyme Ube2T

6N13 | pdb_00006n13

UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin

6R75 | pdb_00006r75

Crystal structure of human Ube2T E54R mutant

7ZF1 | pdb_00007zf1

Structure of ubiquitinated FANCI in complex with FANCD2 and double-stranded DNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5C1Z | pdb_00005c1z

5C23 | pdb_00005c23

5N2W | pdb_00005n2w

5N38 | pdb_00005n38

5NGZ | pdb_00005ngz

5OJJ | pdb_00005ojj

6N13 | pdb_00006n13

6R75 | pdb_00006r75

7ZF1 | pdb_00007zf1