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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Costanzi, E."

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Search Summary

This query matches 42 Structures.

Refinements

Structure Determination Methodology

experimental (42)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (28)
	Rattus norvegicus (5)
	Homo sapiens (4)
	synthetic construct (2)
	Alkalilimnicola ehrlichii (1)
	Candidatus Bathyarchaeota archaeon (1)
	Gallus gallus (1)
	unclassified Amycolatopsis (1)

Taxonomy

	Riboviria (28)
	Eukaryota (10)
	Bacteria (2)
	other sequences (2)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (42)

Polymer Entity Type

	Protein (42)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (31)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (35)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (28)
	Transferases (6)

Symmetry Type

	Cyclic (30)
	Asymmetric (13)

SCOP Classification

All beta proteins (11)

AllSelected

1 to 25 of 42 Structures

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5EUS \| pdb_00005eus	Download File View File

Rat prestin STAS domain in complex with bromide

Lolli, G., Pasqualetto, E., Costanzi, E., Bonetto, G., Battistutta, R.

(2016) Biochem J 473: 365-370

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.833 Å
Organisms	Rattus norvegicus
Macromolecule	Prestin,Rat prestin STAS domain (protein)
Unique Ligands	BR, EDO, PG4

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5EUU \| pdb_00005euu	Download File View File

Rat prestin STAS domain in complex with chloride

Lolli, G., Pasqualetto, E., Costanzi, E., Bonetto, G., Battistutta, R.

(2016) Biochem J 473: 365-370

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Rattus norvegicus
Macromolecule	Prestin,Prestin (protein)
Unique Ligands	CL, EDO, PG4, PGE

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5EUW \| pdb_00005euw	Download File View File

Rat prestin STAS domain in complex with nitrate

Lolli, G., Pasqualetto, E., Costanzi, E., Bonetto, G., Battistutta, R.

(2016) Biochem J 473: 365-370

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Rattus norvegicus
Macromolecule	Prestin,Prestin (protein)
Unique Ligands	EDO, NO3, PEG, PG4

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5EUX \| pdb_00005eux	Download File View File

Rat prestin STAS domain in complex with thiocyanate

Lolli, G., Pasqualetto, E., Costanzi, E., Bonetto, G., Battistutta, R.

(2016) Biochem J 473: 365-370

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.038 Å
Organisms	Rattus norvegicus
Macromolecule	Prestin,Prestin (protein)
Unique Ligands	EDO, PEG, PG4, SCN

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5EUZ \| pdb_00005euz	Download File View File

Rat prestin STAS domain in complex with iodide

Lolli, G., Pasqualetto, E., Costanzi, E., Bonetto, G., Battistutta, R.

(2016) Biochem J 473: 365-370

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.403 Å
Organisms	Rattus norvegicus
Macromolecule	Prestin,Prestin (protein)
Unique Ligands	EDO, IOD, PEG, PGE

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5EZB \| pdb_00005ezb	Download File View File

Chicken prestin STAS domain

Lolli, G., Pasqualetto, E., Costanzi, E., Bonetto, G., Battistutta, R.

(2016) Biochem J 473: 365-370

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Gallus gallus
Macromolecule	Chicken prestin STAS domain,Chicken prestin STAS domain (protein)
Unique Ligands	GOL, NA, OXL, ZN

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6Z3X \| pdb_00006z3x	Download File View File

Crystal structure of the designed antibody DesAb-anti-HSA-P1

Costanzi, E., Sormanni, P., Ricagno, S.

(2022) Sci Adv 8: eabp9540-eabp9540

Released	2021-03-31
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	synthetic construct
Macromolecule	DesAb-anti-HSA-P1 (protein)
Unique Ligands	CAC, IMD, NA

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7ALH \| pdb_00007alh	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup C2).

Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

(2021) Int J Mol Sci 22:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7ALI \| pdb_00007ali	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.65A resolution (spacegroup P2(1)).

Costanzi, E., Demitri, N., Giabbai, B., Heroux, A., Storici, P.

(2021) Int J Mol Sci 22:

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)

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7B3E \| pdb_00007b3e	Download File View File

Crystal structure of myricetin covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Acs Pharmacol Transl Sci 4: 1096-1110

Released	2021-01-13
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	CL, EDO, MYC, NA

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7BB2 \| pdb_00007bb2	Download File View File

Crystal structure of the main protease (3CLpro/Mpro) of SARS-CoV-2 at 1.6A resolution (spacegroup P2(1)2(1)2(1))

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, EDO, NA

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7BE7 \| pdb_00007be7	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, NA, PEG

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7BFB \| pdb_00007bfb	Download File View File

Crystal structure of ebselen covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

To be published

Released	2021-03-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	9JT, EDO, NA

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7BGP \| pdb_00007bgp	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in absence of DTT.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, NA

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7NBY \| pdb_00007nby	Download File View File

Crystal structure of SU3327 (halicin) covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

To be published

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Main Protease (protein)
Unique Ligands	CL, NA, NO3, SO4, U88

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7NF5 \| pdb_00007nf5	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup C2.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL, EDO, IPA, NA

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7NG3 \| pdb_00007ng3	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup P1.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ALD, CL

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7NG6 \| pdb_00007ng6	Download File View File

Crystal structure of MG-132 covalently bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup P1 in absence of DTT.

Costanzi, E., Demitri, N., Giabbai, B., Storici, P.

(2021) Int J Mol Sci 22:

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ACT, ALD, CL

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7PHZ \| pdb_00007phz	Download File View File

Crystal structure of X77 bound to the main protease (3CLpro/Mpro) of SARS-CoV-2 in spacegroup P2(1)2(1)2(1).

Costanzi, E., Demitri, N., Storici, P.

(2024) J Chem Inf Model 64: 892-904

Released	2022-09-07
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Replicase polyprotein 1ab (protein)
Unique Ligands	CL, DMS, EDO, NA, X77

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7Q5E \| pdb_00007q5e	Download File View File

Crystal structure of F2F-2020209-00X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Storici, P.

(2022) Eur J Med Chem 244: 114853-114853

Released	2022-11-23
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	90I, CL, NA

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7Q5F \| pdb_00007q5f	Download File View File

Crystal structure of F2F-2020216-01X bound to the main protease (3CLpro/Mpro) of SARS-CoV-2.

Costanzi, E., Demitri, N., Storici, P.

(2022) Eur J Med Chem 244: 114853-114853

Released	2022-11-23
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	90X, CL, EDO, NA, NO3, SO4

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8A2C \| pdb_00008a2c	Download File View File

The crystal structure of the S178A mutant of PET40, a PETase enzyme from an unclassified Amycolatopsis

Costanzi, E., Applegate, V., Port, A., Smits, S.H.J.

(2024) FEBS J 291: 70-91

Released	2023-06-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	unclassified Amycolatopsis
Macromolecule	PET40 S178A (protein)
Unique Ligands	CL, EDO, EPE, MG

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8A5V \| pdb_00008a5v	Download File View File

Crystal structure of the human phosposerine aminotransferase (PSAT)

Costanzi, E., Demitri, N., Ullah, R., Marchesan, F., Peracchi, A., Zangelmi, E., Storici, P., Campanini, B.

(2023) Protein Sci 32: e4609-e4609

Released	2023-03-29
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Homo sapiens
Macromolecule	Phosphoserine aminotransferase (protein)
Unique Ligands	PMP, SO4

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8A5W \| pdb_00008a5w	Download File View File

Crystal structure of the human phosphoserine aminotransferase (PSAT) in complex with O-phosphoserine

Costanzi, E., Demitri, N., Ullah, R., Marchesan, F., Peracchi, A., Zangelmi, E., Storici, P., Campanini, B.

(2023) Protein Sci 32: e4609-e4609

Released	2023-03-29
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Homo sapiens
Macromolecule	Phosphoserine aminotransferase (protein)
Unique Ligands	E1U, PMP, SEP, SO4

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8B4U \| pdb_00008b4u	Download File View File

The crystal structure of PET46, a PETase enzyme from Candidatus bathyarchaeota

Costanzi, E., Applegate, V., Schumacher, J., Smits, S.H.J.

(2023) Commun Chem 6: 193-193

Released	2023-08-23
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Candidatus Bathyarchaeota archaeon
Macromolecule	Alpha/beta hydrolase (protein)
Unique Ligands	CL, EDO, PO4

1 to 25 of 42 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5EUS | pdb_00005eus

5EUU | pdb_00005euu

5EUW | pdb_00005euw

5EUX | pdb_00005eux

5EUZ | pdb_00005euz

5EZB | pdb_00005ezb

6Z3X | pdb_00006z3x

7ALH | pdb_00007alh

7ALI | pdb_00007ali

7B3E | pdb_00007b3e

7BB2 | pdb_00007bb2

7BE7 | pdb_00007be7

7BFB | pdb_00007bfb

7BGP | pdb_00007bgp

7NBY | pdb_00007nby

7NF5 | pdb_00007nf5

7NG3 | pdb_00007ng3

7NG6 | pdb_00007ng6

7PHZ | pdb_00007phz

7Q5E | pdb_00007q5e

7Q5F | pdb_00007q5f

8A2C | pdb_00008a2c

8A5V | pdb_00008a5v

8A5W | pdb_00008a5w

8B4U | pdb_00008b4u