RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Craigie, R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (12)
	synthetic construct (3)
	Escherichia coli (2)
	Homo sapiens (2)
	Human spumaretrovirus (1)
	Mus musculus (1)

Taxonomy

	Riboviria (13)
	Eukaryota (3)
	other sequences (3)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (16)
	DNA (8)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	> 4.5 (2)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (1)
	2020 - 2024 (6)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (2)

Symmetry Type

	Cyclic (16)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All alpha proteins (3)

AllSelected

1 to 16 of 16 Structures

Page 1 of 1

Sort by

Explore in 3D

1BIS	Download File View File

HIV-1 INTEGRASE CORE DOMAIN

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)

Explore in 3D

1BIU	Download File View File

HIV-1 INTEGRASE CORE DOMAIN COMPLEXED WITH MG++

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	MG

Explore in 3D

1BIZ	Download File View File

HIV-1 INTEGRASE CORE DOMAIN

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	CAC

Explore in 3D

1CI4	Download File View File

THE CRYSTAL STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)

Umland, T.C., Wei, S.-Q., Craigie, R., Davies, D.R.

(2000) Biochemistry 39: 9130-9138

Released	2000-08-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)) (protein)

Explore in 3D

1ITG	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HIV-1 INTEGRASE: SIMILARITY TO OTHER POLYNUCLEOTIDYL TRANSFERASES

Dyda, F., Hickman, A.B., Jenkins, T.M., Engelman, A., Craigie, R., Davies, D.R.

(1994) Science 266: 1981-1986

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	CAC

Explore in 3D

1K6Y	Download File View File

Crystal Structure of a Two-Domain Fragment of HIV-1 Integrase

Wang, J., Ling, H., Yang, W., Craigie, R.

(2001) EMBO J 20: 7333-7343

Released	2001-12-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Integrase (protein)
Unique Ligands	K, PO4, ZN

Explore in 3D

1QS4	Download File View File

Core domain of HIV-1 integrase complexed with Mg++ and 1-(5-chloroindol-3-yl)-3-hydroxy-3-(2H-tetrazol-5-yl)-propenone

Goldgur, Y., Craigie, R., Fujiwara, T., Yoshinaga, T., Davies, D.R.

(1999) Proc Natl Acad Sci U S A 96: 13040-13043

Released	1999-11-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49)) (protein)
Unique Ligands	100, MG

Explore in 3D

2BZF	Download File View File

Structural basis for DNA bridging by barrier-to-autointegration factor (BAF)

Bradley, C.M., Ronning, D.R., Ghirlando, R., Craigie, R., Dyda, F.

(2005) Nat Struct Mol Biol 12: 935

Released	2005-09-15
Method	X-RAY DIFFRACTION 2.87 Å
Organisms	Homo sapiens
Macromolecule	BARRIER-TO-AUTOINTEGRATION FACTOR (protein) 5'-D(CPCPTPCPCPAPCP)-3' (nucleic acid) 5'-D(GPTPGPGPAPGPGP)-3' (nucleic acid)

Explore in 3D

2V0X	Download File View File

The dimerization domain of LAP2alpha

Bradley, C.M., Jones, S., Huang, Y., Suzuki, Y., Kvaratskhelia, M., Hickman, A.B., Craigie, R., Dyda, F.

(2007) Structure 15: 643

Released	2007-06-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	LAMINA-ASSOCIATED POLYPEPTIDE 2 ISOFORMS ALPHA/ZETA (protein)

Explore in 3D

4BAC	Download File View File

prototype foamy virus strand transfer complexes on product DNA

Yin, Z., Lapkouski, M., Yang, W., Craigie, R.

(2012) Protein Sci 21: 1849

Released	2012-10-10
Method	X-RAY DIFFRACTION 3.263 Å
Organisms	Human spumaretrovirus synthetic construct
Macromolecule	INTEGRASE (protein) 5'-D(APGPGPAPGPCPCPAPAPGPAPCPGPGP APTPCP)-3' (nucleic acid) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTP TPTPGPTPAP)-3' (nucleic acid) DNA (38-MER) (nucleic acid)
Unique Ligands	MG, ZN

Explore in 3D

6U8Q	Download File View File

CryoEM structure of HIV-1 cleaved synaptic complex (CSC) intasome

Li, M., Chen, X., Craigie, R.

(2020) J Mol Biol 432: 2055-2066

Released	2020-02-05
Method	ELECTRON MICROSCOPY 4.67 Å
Organisms	Escherichia coli Human immunodeficiency virus 1
Macromolecule	Integrase (protein) DNA (25-MER) (nucleic acid) DNA (27-MER) (nucleic acid)
Unique Ligands	DLU, MG

Explore in 3D

6VDK	Download File View File

CryoEM structure of HIV-1 conserved Intasome Core

Li, M., Chen, X., Craigie, R.

(2020) J Mol Biol 432: 2055-2066

Released	2020-02-05
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Escherichia coli Human immunodeficiency virus 1
Macromolecule	Integrase (protein) DNA (25-MER) (nucleic acid) DNA (27-MER) (nucleic acid)
Unique Ligands	DLU, MG

Explore in 3D

8W09	Download File View File

HIV-1 wild-type intasome core

Li, M., Craigie, R.

(2024) J Mol Biol 436: 168557-168557

Released	2024-04-17
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Integrase (protein) vDNA (nucleic acid)
Unique Ligands	DLU, MG, ZN

Explore in 3D

8W2R	Download File View File

HIV-1 P5-IN intasome core

Li, M., Craigie, R.

(2024) J Mol Biol 436: 168557-168557

Released	2024-04-17
Method	ELECTRON MICROSCOPY 3.23 Å
Organisms	Human immunodeficiency virus 1 synthetic construct
Macromolecule	Integrase (protein) DNA (5'-D(APCPTPGPCPTPAPGPAPGPAPTPTPTPTPCPCPCPG)-3') (nucleic acid) DNA (5'-D(PCPGPGPGPAPAPAPAPTPCPTPCPTPAPGPCPA)-3') (nucleic acid)
Unique Ligands	DLU, MG, ZN

Explore in 3D

8W34	Download File View File

HIV-1 intasome core assembled with wild-type integrase, 1F

Li, M., Craigie, R.

(2024) J Mol Biol 436: 168557-168557

Released	2024-04-17
Method	ELECTRON MICROSCOPY 2.83 Å
Organisms	Human immunodeficiency virus 1 synthetic construct
Macromolecule	Integrase (protein) DNA (5'-D(APCPTPGPCPTPAPGPAPGPAPTPTPTPTPCPCPAPC)-3') (nucleic acid) DNA (5'-D(PGPTPGPGPAPAPAPAPTPCPTPCPTPAPGPCPA)-3') (nucleic acid)
Unique Ligands	DLU, MG, ZN

Explore in 3D

9C9M	Download File View File

HIV-1 intasome core bound with DTG

Li, M., Craigie, R.

(2024) Viruses 16:

Released	2024-07-31
Method	ELECTRON MICROSCOPY 2.01 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Integrase (protein) vDNA (nucleic acid) viral DNA (nucleic acid)
Unique Ligands	DLU, MG, ZN

1 to 16 of 16 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification