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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dalal, V."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Dickeya dadantii (6)
	Candidatus Liberibacter asiaticus str. psy62 (5)
	Bacillus subtilis (4)
	Entamoeba histolytica (3)
	Momordica charantia (1)
	Staphylococcus aureus (1)

Taxonomy

	Bacteria (16)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (8)
	2020 - 2024 (12)

Enzyme Classification Name

	Hydrolases (4)
	Lyases (4)
	Oxidoreductases (4)

Membrane Protein Annotation

	PDBTM (6)
	MemProtMD (4)

Symmetry Type

	Cyclic (18)
	Asymmetric (5)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	Artifacts (3)
	All beta proteins (1)

AllSelected

1 to 20 of 20 Structures

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5Z2J \| pdb_00005z2j	Download File View File

structure of S38A mutant metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus

Saini, G., Sharma, N., Dalal, V., Kumar, P., Sharma, A.K.

(2018) J Struct Biol 204: 228-239

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Candidatus Liberibacter asiaticus str. psy62
Macromolecule	Periplasmic solute binding protein (protein)
Unique Ligands	ACT, GOL, SO4

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5Z2K \| pdb_00005z2k	Download File View File

Structure of S38A mutant Mn-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

Saini, G., Sharma, N., Dalal, V., Kumar, P., Sharma, A.K.

(2018) J Struct Biol 204: 228-239

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Candidatus Liberibacter asiaticus str. psy62
Macromolecule	Periplasmic solute binding protein (protein)
Unique Ligands	ACT, GOL, MN, SO4

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5Z35 \| pdb_00005z35	Download File View File

Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus liberibacter asiaticus

Saini, G., Sharma, N., Dalal, V., Kumar, P., Sharma, A.K.

(2018) J Struct Biol 204: 228-239

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Candidatus Liberibacter asiaticus str. psy62
Macromolecule	Periplasmic solute binding protein (protein)
Unique Ligands	ACT, GOL, SO4

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5ZEE \| pdb_00005zee	Download File View File

Crystal structure of Entamoeba histolytica Arginase in complex with N(omega)-hydroxy-L-arginine (NOHA) at 1.74 A

Malik, A., Dalal, V., Ankri, S., Tomar, S.

(2019) FEBS J 286: 4135-4155

Released	2019-06-26
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Entamoeba histolytica
Macromolecule	Arginase (protein)
Unique Ligands	EDO, HAR, MN

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5ZEF \| pdb_00005zef	Download File View File

Crystal structure of Entamoeba histolytica Arginase in complex with L- Norvaline at 2.01 A

Malik, A., Dalal, V., Ankri, S., Tomar, S.

(2019) FEBS J 286: 4135-4155

Released	2019-06-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Entamoeba histolytica
Macromolecule	Arginase (protein)
Unique Ligands	EDO, GOL, MN, NVA

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5ZEH \| pdb_00005zeh	Download File View File

Crystal structure of Entamoeba histolytica Arginase in complex with L- Ornithine at 2.35 A

Malik, A., Dalal, V., Ankri, S., Tomar, S.

(2019) FEBS J 286: 4135-4155

Released	2019-06-26
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Entamoeba histolytica
Macromolecule	Arginase (protein)
Unique Ligands	EDO, MN, ORN

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5ZH8 \| pdb_00005zh8	Download File View File

Crystal Structure of FmtA from Staphylococcus aureus at 2.58 A

Dalal, V., Kumar, P., Golemi-Kotra, D., Kumar, P.

(2019) J Mol Biology 431: 3107-3123

Released	2019-07-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Staphylococcus aureus
Macromolecule	Protein FmtA (protein)
Unique Ligands	GOL

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5ZHA \| pdb_00005zha	Download File View File

Structure of Y68F mutant Mn-Bound periplasmic metal binding protein from candidatus liberibacter asiaticus

Saini, G., Sharma, N., Dalal, V., Kumar, P., Sharma, A.K.

(2018) J Struct Biol 204: 228-239

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Candidatus Liberibacter asiaticus str. psy62
Macromolecule	Periplasmic solute binding protein (protein)
Unique Ligands	ACT, GOL, MN, SO4

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6IXI \| pdb_00006ixi	Download File View File

structure of Cd-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

Kumar, P., Sharma, N., Dalal, V., Ghosh, D.K., Kumar, P., Sharma, A.K.

(2020) Metallomics 12: 280-289

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Candidatus Liberibacter asiaticus str. psy62
Macromolecule	Periplasmic solute binding protein (protein)
Unique Ligands	ACT, CD, GOL, SO4

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6KM8 \| pdb_00006km8	Download File View File

Crystal Structure of Momordica charantia 7S globulin

Kesari, P., Pratap, S., Dhankhar, P., Dalal, V., Kumar, P.

(2020) Sci Rep 10: 1160-1160

Released	2020-02-12
Method	X-RAY DIFFRACTION 3.099 Å
Organisms	Momordica charantia
Macromolecule	7S globulin (protein)
Unique Ligands	ACT, CU

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6KMM \| pdb_00006kmm	Download File View File

Crystal Structure of HEPES bound Dye Decolorizing peroxidase from Bacillus subtilis

Dhankhar, P., Dalal, V., Mahto, J.K., Kumar, P.

(2020) Arch Biochem Biophys 693: 108590-108590

Released	2020-10-21
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Bacillus subtilis
Macromolecule	Deferrochelatase/peroxidase EfeB (protein)
Unique Ligands	CL, EPE, GOL, HEM, MPD, NA, OXY, PO4

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6KMN \| pdb_00006kmn	Download File View File

Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis

Dhankhar, P., Dalal, V., Mahto, J.K., Kumar, P.

(2020) Arch Biochem Biophys 693: 108590-108590

Released	2020-10-21
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Bacillus subtilis
Macromolecule	Deferrochelatase/peroxidase EfeB (protein)
Unique Ligands	CL, GOL, HEM, MPD, OXY

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7DLK \| pdb_00007dlk	Download File View File

Crystal Structure of veratryl alcohol bound Dye Decolorizing peroxidase from Bacillus subtilis

Dhankhar, P., Dalal, V., Kumar, P.

(2021) Int J Biol Macromol 193: 601-608

Released	2021-11-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus subtilis
Macromolecule	Deferrochelatase/peroxidase (protein)
Unique Ligands	CL, EPE, GOL, HEM, MPD, OXY, PO4, VOH

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7E5Q \| pdb_00007e5q	Download File View File

Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis at acidic pH

Dhankhar, P., Dalal, V., Kumar, P.

(2022) Proteins

Released	2022-08-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Deferrochelatase/peroxidase (protein)
Unique Ligands	CIT, CL, EDO, GOL, HEM, NA, OXY, PEG

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8F32 \| pdb_00008f32	Download File View File

ELIC with Propylamine in SMA nanodiscs with 2:1:1 POPC:POPE:POPG

Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.

(2024) Nat Commun 15: 25-25

Released	2023-11-15
Method	ELECTRON MICROSCOPY 3.71 Å
Organisms	Dickeya dadantii
Macromolecule	Erwinia chrysanthemi ligand-gated ion channel (protein)
Unique Ligands	3CN

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8F33 \| pdb_00008f33	Download File View File

ELIC with Propylamine in saposin nanodiscs with 2:1:1 POPC:POPE:POPG

Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.

(2024) Nat Commun 15: 25-25

Released	2023-11-15
Method	ELECTRON MICROSCOPY 3.28 Å
Organisms	Dickeya dadantii
Macromolecule	Erwinia chrysanthemi ligand-gated ion channel (protein)
Unique Ligands	3CN

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8F34 \| pdb_00008f34	Download File View File

ELIC with Propylamine in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG

Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.

(2024) Nat Commun 15: 25-25

Released	2023-11-15
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Dickeya dadantii
Macromolecule	Erwinia chrysanthemi ligand-gated ion channel (protein)
Unique Ligands	3CN

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8F35 \| pdb_00008f35	Download File View File

Apo ELIC in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG

Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.

(2024) Nat Commun 15: 25-25

Released	2023-11-15
Method	ELECTRON MICROSCOPY 3.17 Å
Organisms	Dickeya dadantii
Macromolecule	Erwinia chrysanthemi ligand-gated ion channel (protein)

Explore in 3D

8TWV \| pdb_00008twv	Download File View File

ELIC5 with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.

(2024) Nat Commun 15: 25-25

Released	2024-03-27
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Dickeya dadantii
Macromolecule	Gamma-aminobutyric-acid receptor subunit beta-1 (protein)
Unique Ligands	3CN

Explore in 3D

8TWZ \| pdb_00008twz	Download File View File

ELIC with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

Dalal, V., Arcario, M.J., Petroff II, J.T., Deitzen, N.M., Tan, B.K., Brannigan, G., Cheng, W.W.L.

(2024) Nat Commun 15: 25-25

Released	2024-03-27
Method	ELECTRON MICROSCOPY 3.17 Å
Organisms	Dickeya dadantii
Macromolecule	Erwinia chrysanthemi ligand-gated ion channel (protein)
Unique Ligands	3CN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5Z2J | pdb_00005z2j

structure of S38A mutant metal-free periplasmic metal binding protein from candidatus liberibacter asiaticus

5Z2K | pdb_00005z2k

Structure of S38A mutant Mn-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

5Z35 | pdb_00005z35

Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus liberibacter asiaticus

5ZEE | pdb_00005zee

Crystal structure of Entamoeba histolytica Arginase in complex with N(omega)-hydroxy-L-arginine (NOHA) at 1.74 A

5ZEF | pdb_00005zef

Crystal structure of Entamoeba histolytica Arginase in complex with L- Norvaline at 2.01 A

5ZEH | pdb_00005zeh

Crystal structure of Entamoeba histolytica Arginase in complex with L- Ornithine at 2.35 A

5ZH8 | pdb_00005zh8

Crystal Structure of FmtA from Staphylococcus aureus at 2.58 A

5ZHA | pdb_00005zha

Structure of Y68F mutant Mn-Bound periplasmic metal binding protein from candidatus liberibacter asiaticus

6IXI | pdb_00006ixi

structure of Cd-bound periplasmic metal binding protein from candidatus liberibacter asiaticus

6KM8 | pdb_00006km8

Crystal Structure of Momordica charantia 7S globulin

6KMM | pdb_00006kmm

Crystal Structure of HEPES bound Dye Decolorizing peroxidase from Bacillus subtilis

6KMN | pdb_00006kmn

Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis

7DLK | pdb_00007dlk

Crystal Structure of veratryl alcohol bound Dye Decolorizing peroxidase from Bacillus subtilis

7E5Q | pdb_00007e5q

Crystal Structure of Dye Decolorizing peroxidase from Bacillus subtilis at acidic pH

8F32 | pdb_00008f32

ELIC with Propylamine in SMA nanodiscs with 2:1:1 POPC:POPE:POPG

8F33 | pdb_00008f33

ELIC with Propylamine in saposin nanodiscs with 2:1:1 POPC:POPE:POPG

8F34 | pdb_00008f34

ELIC with Propylamine in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG

8F35 | pdb_00008f35

Apo ELIC in spMSP1D1 nanodiscs with 2:1:1 POPC:POPE:POPG

8TWV | pdb_00008twv

ELIC5 with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

8TWZ | pdb_00008twz

ELIC with Propylamine in spNW15 nanodiscs with 2:1:1 POPC:POPE:POPG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5Z2J | pdb_00005z2j

5Z2K | pdb_00005z2k

5Z35 | pdb_00005z35

5ZEE | pdb_00005zee

5ZEF | pdb_00005zef

5ZEH | pdb_00005zeh

5ZH8 | pdb_00005zh8

5ZHA | pdb_00005zha

6IXI | pdb_00006ixi

6KM8 | pdb_00006km8

6KMM | pdb_00006kmm

6KMN | pdb_00006kmn

7DLK | pdb_00007dlk

7E5Q | pdb_00007e5q

8F32 | pdb_00008f32

8F33 | pdb_00008f33

8F34 | pdb_00008f34

8F35 | pdb_00008f35

8TWV | pdb_00008twv

8TWZ | pdb_00008twz