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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Derebe, M.G."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Bacillus cereus (6)
	Geobacter sulfurreducens PCA (5)
	Bacillus cereus ATCC 14579 (1)
	Bacillus cereus m1550 (1)
	Homo sapiens (1)
	Methanothermobacter thermautotrophicus str. Delta H (1)
	Mus musculus (1)

Taxonomy

	Bacteria (13)
	Eukaryota (2)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (1)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (15)
	2015 - 2019 (1)

Membrane Protein Annotation

	MemProtMD (12)
	PDBTM (12)
	mpstruc (12)
	OPM (2)

Symmetry Type

	Cyclic (14)
	Asymmetric (1)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 16 of 16 Structures

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3K03 \| pdb_00003k03	Download File View File

Crystal Structure of CNG mimicking NaK mutant, NaK-DTPP, K+ complex

Jiang, Y., Derebe, M.G.

(2011) Proc Natl Acad Sci U S A 108: 598-602

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein NaK (protein)
Unique Ligands	K, MPD

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3K04 \| pdb_00003k04	Download File View File

Crystal Structure of CNG mimicking NaK mutant, NaK-DTPP, Na+ complex

Jiang, Y., Derebe, M.G.

(2011) Proc Natl Acad Sci U S A 108: 592-597

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein NaK (protein)
Unique Ligands	MPD, NA

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3K06 \| pdb_00003k06	Download File View File

Crystal Structure of CNG mimicking NaK mutant, NaK-NTPP, K+ complex

Jiang, Y., Derebe, M.G.

(2011) Proc Natl Acad Sci U S A 108: 592-597

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein NaK (protein)
Unique Ligands	K, MPD

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3K08 \| pdb_00003k08	Download File View File

Crystal Structure of CNG mimicking NaK mutant, NaK-NTPP, Na+ complex

Jiang, Y., Derebe, M.G.

(2011) Proc Natl Acad Sci U S A 108: 592-597

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein NaK (protein)
Unique Ligands	MPD, NA

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3K0D \| pdb_00003k0d	Download File View File

Crystal Structure of CNG mimicking NaK mutant, NaK-ETPP, K+ complex

Jiang, Y., Derebe, M.G.

(2011) Proc Natl Acad Sci U S A 108: 592-597

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein NaK (protein)
Unique Ligands	K, MPD

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3K0G \| pdb_00003k0g	Download File View File

Crystal Structure of CNG mimicking NaK mutant, NaK-ETPP, Na+ complex

Jiang, Y., Derebe, M.G.

(2011) Proc Natl Acad Sci U S A 108: 592-597

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus cereus
Macromolecule	Potassium channel protein NaK (protein)
Unique Ligands	MPD, NA

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3OUF \| pdb_00003ouf	Download File View File

Structure of a K+ selective NaK mutant

Derebe, M.G., Sauer, D.B., Zeng, W., Alam, A., Shi, N., Jiang, Y.

(2011) Proc Natl Acad Sci U S A 108: 598-602

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Bacillus cereus m1550
Macromolecule	Potassium channel protein (protein)
Unique Ligands	K, MPD

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3OUS \| pdb_00003ous	Download File View File

MthK channel pore T59A mutant

Derebe, M.G., Sauer, D.B., Zeng, W., Alam, A., Shi, N., Jiang, Y.

(2011) Proc Natl Acad Sci U S A 108: 598-602

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Calcium-gated potassium channel mthK (protein)
Unique Ligands	K

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4GVL \| pdb_00004gvl	Download File View File

Crystal Structure of the GsuK RCK domain

Kong, C., Zeng, W., Ye, S., Chen, L., Sauer, D.B., Lam, Y., Derebe, M.G., Jiang, Y.

(2012) Elife 1: e00184-e00184

Released	2012-12-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	TrkA domain protein (protein)
Unique Ligands	AMP, CA, ZN

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4GX0 \| pdb_00004gx0	Download File View File

Crystal structure of the GsuK L97D mutant

Kong, C., Zeng, W., Ye, S., Chen, L., Sauer, D.B., Lam, Y., Derebe, M.G., Jiang, Y.

(2012) Elife 1: e00184-e00184

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	TrkA domain protein (protein)
Unique Ligands	CA, GLC, K, PO4, ZN
Unique branched monosaccharides	GLC

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4GX1 \| pdb_00004gx1	Download File View File

Crystal structure of the GsuK bound to ADP

Kong, C., Zeng, W., Ye, S., Chen, L., Sauer, D.B., Lam, Y., Derebe, M.G., Jiang, Y.

(2012) Elife 1: e00184-e00184

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	TrkA domain protein (protein)
Unique Ligands	ADP, CA, GLC, K, PO4, ZN

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4GX2 \| pdb_00004gx2	Download File View File

GsuK channel bound to NAD

Kong, C., Zeng, W., Ye, S., Chen, L., Sauer, D.B., Lam, Y., Derebe, M.G., Jiang, Y.

(2012) Elife 1: e00184-e00184

Released	2012-12-26
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	TrkA domain protein (protein)
Unique Ligands	CA, K, NAD, PO4, ZN

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4GX5 \| pdb_00004gx5	Download File View File

GsuK Channel

Kong, C., Zeng, W., Ye, S., Chen, L., Sauer, D.B., Lam, Y., Derebe, M.G., Jiang, Y.

(2012) Elife 1: e00184-e00184

Released	2012-12-26
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Geobacter sulfurreducens PCA
Macromolecule	TrkA domain protein (protein)
Unique Ligands	CA, K, ZN

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4MTH \| pdb_00004mth	Download File View File

Crystal structure of mature human RegIIIalpha

Derebe, M.G.

(2013) Nature 505: 103-107

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Regenerating islet-derived protein 3-alpha 15 kDa form (protein)
Unique Ligands	ZN

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4Q5G \| pdb_00004q5g	Download File View File

Crystal Structure of mouse Serum Amyloid A3

Derebe, M.G., Hooper, L.V.

(2014) Elife

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.057 Å
Organisms	Mus musculus
Macromolecule	Serum amyloid A-3 protein (protein)

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4ZBM \| pdb_00004zbm	Download File View File

Crystal structure of Drosophila cyclic nucleotide gated channel pore mimicking NaK mutant

Lam, Y., Zeng, W., Derebe, M.G., Jiang, Y.

(2015) J Gen Physiol 146: 255-263

Released	2015-07-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	Potassium channel protein (protein)
Unique Ligands	BA, K

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3K03 | pdb_00003k03

Crystal Structure of CNG mimicking NaK mutant, NaK-DTPP, K+ complex

3K04 | pdb_00003k04

Crystal Structure of CNG mimicking NaK mutant, NaK-DTPP, Na+ complex

3K06 | pdb_00003k06

Crystal Structure of CNG mimicking NaK mutant, NaK-NTPP, K+ complex

3K08 | pdb_00003k08

Crystal Structure of CNG mimicking NaK mutant, NaK-NTPP, Na+ complex

3K0D | pdb_00003k0d

Crystal Structure of CNG mimicking NaK mutant, NaK-ETPP, K+ complex

3K0G | pdb_00003k0g

Crystal Structure of CNG mimicking NaK mutant, NaK-ETPP, Na+ complex

3OUF | pdb_00003ouf

Structure of a K+ selective NaK mutant

3OUS | pdb_00003ous

MthK channel pore T59A mutant

4GVL | pdb_00004gvl

Crystal Structure of the GsuK RCK domain

4GX0 | pdb_00004gx0

Crystal structure of the GsuK L97D mutant

4GX1 | pdb_00004gx1

Crystal structure of the GsuK bound to ADP

4GX2 | pdb_00004gx2

GsuK channel bound to NAD

4GX5 | pdb_00004gx5

GsuK Channel

4MTH | pdb_00004mth

Crystal structure of mature human RegIIIalpha

4Q5G | pdb_00004q5g

Crystal Structure of mouse Serum Amyloid A3

4ZBM | pdb_00004zbm

Crystal structure of Drosophila cyclic nucleotide gated channel pore mimicking NaK mutant

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3K03 | pdb_00003k03

3K04 | pdb_00003k04

3K06 | pdb_00003k06

3K08 | pdb_00003k08

3K0D | pdb_00003k0d

3K0G | pdb_00003k0g

3OUF | pdb_00003ouf

3OUS | pdb_00003ous

4GVL | pdb_00004gvl

4GX0 | pdb_00004gx0

4GX1 | pdb_00004gx1

4GX2 | pdb_00004gx2

4GX5 | pdb_00004gx5

4MTH | pdb_00004mth

4Q5G | pdb_00004q5g

4ZBM | pdb_00004zbm