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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Doan, T.T.N."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Halalkalibacterium halodurans (4)
	Xanthomonas oryzae pv. oryzae KACC 10331 (4)
	Xanthomonas oryzae pv. oryzae MAFF 311018 (1)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)

Release Date

2010 - 2014 (9)

Enzyme Classification Name

	Isomerases (4)
	Ligases (4)

Symmetry Type

	Cyclic (7)
	Asymmetric (1)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	Alpha and beta proteins (a+b) (4)
	All beta proteins (1)

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1 to 9 of 9 Structures

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3NX6 \| pdb_00003nx6	Download File View File

Crystal Structure of co-chaperonin, GroES (Xoo4289) from Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Doan, T.T.N., Kang, L.-W.

To be published

Released	2010-07-28
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	10kDa chaperonin (protein)

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3P14 \| pdb_00003p14	Download File View File

Crystal structure of L-rhamnose isomerase with a novel high thermo-stability from Bacillus halodurans

Doan, T.T.N., Prabhu, P., Kang, L.W., Lee, J.K.

(2014) FEBS J 281: 3446-3459

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	L-rhamnose isomerase (protein)

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3R5F \| pdb_00003r5f	Download File View File

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

Doan, T.T.N., Kim, J.K., Kang, L.W.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	D-alanine--D-alanine ligase 1 (protein)
Unique Ligands	ATP, MG

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3RFC \| pdb_00003rfc	Download File View File

Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP

Doan, T.T.N., Kim, J.K., Ahn, Y.J., Kang, L.W.

To be published

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas oryzae pv. oryzae MAFF 311018
Macromolecule	D-alanine--D-alanine ligase 1 (protein)
Unique Ligands	ADP, MG

Explore in 3D

3UU0 \| pdb_00003uu0	Download File View File

Crystal structure of L-rhamnose isomerase from Bacillus halodurans in complex with Mn

Doan, T.T.N., Prabhu, P., Kim, J.K., Jeya, M., Kang, L.W., Lee, J.K.

(2014) FEBS J 281: 3446-3459

Released	2012-02-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	L-rhamnose isomerase (protein)
Unique Ligands	MN

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3UVA \| pdb_00003uva	Download File View File

Crystal structure of L-rhamnose isomerase mutant W38F from Bacillus halodurans in complex with Mn

Doan, T.T.N., Prabhu, P., Jeya, M., Kim, J.K., Kang, L.W., Lee, J.K.

(2014) FEBS J 281: 3446-3459

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	L-Rhamnose isomerase (protein)
Unique Ligands	MN

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3UXI \| pdb_00003uxi	Download File View File

Crystal structure of L-rhamnose isomerase W38A mutant from Bacillus halodurans

Doan, T.T.N., Prabhu, P., Kim, J.K., Jeya, M., Kang, L.W., Lee, J.K.

(2014) FEBS J 281: 3446-3459

Released	2012-12-26
Method	X-RAY DIFFRACTION 2.73 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	L-Rhamnose isomerase (protein)
Unique Ligands	MN

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4L1K \| pdb_00004l1k	Download File View File

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with AMPPNP

Doan, T.T.N., Kim, J.K., Kang, L.W.

(2014) Arch Biochem Biophys 545C: 92-99

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	D-alanine--D-alanine ligase (protein)
Unique Ligands	ANP, MG

Explore in 3D

4ME6 \| pdb_00004me6	Download File View File

Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP

Doan, T.T.N., Kim, J.K., Ahn, Y.J., Lee, B.M., Kang, L.W.

(2014) Arch Biochem Biophys 545C: 92-99

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas oryzae pv. oryzae KACC 10331
Macromolecule	D-alanine--D-alanine ligase (protein)
Unique Ligands	ADP, MG

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3NX6 | pdb_00003nx6

Crystal Structure of co-chaperonin, GroES (Xoo4289) from Xanthomonas oryzae pv. oryzae KACC10331

3P14 | pdb_00003p14

Crystal structure of L-rhamnose isomerase with a novel high thermo-stability from Bacillus halodurans

3R5F | pdb_00003r5f

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP

3RFC | pdb_00003rfc

Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP

3UU0 | pdb_00003uu0

Crystal structure of L-rhamnose isomerase from Bacillus halodurans in complex with Mn

3UVA | pdb_00003uva

Crystal structure of L-rhamnose isomerase mutant W38F from Bacillus halodurans in complex with Mn

3UXI | pdb_00003uxi

Crystal structure of L-rhamnose isomerase W38A mutant from Bacillus halodurans

4L1K | pdb_00004l1k

Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with AMPPNP

4ME6 | pdb_00004me6

Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3NX6 | pdb_00003nx6

3P14 | pdb_00003p14

3R5F | pdb_00003r5f

3RFC | pdb_00003rfc

3UU0 | pdb_00003uu0

3UVA | pdb_00003uva

3UXI | pdb_00003uxi

4L1K | pdb_00004l1k

4ME6 | pdb_00004me6