RCSB PDB: Search

1BYL	Download File View File

BLEOMYCIN RESISTANCE PROTEIN FROM STREPTOALLOTEICHUS HINDUSTANUS

Dumas, P., Bergdoll, M., Cagnon, C., Masson, J.M.

(1994) EMBO J 13: 2483-2492

Released	1999-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptoalloteichus hindustanus
Macromolecule	PROTEIN (BLEOMYCIN RESISTANCE PROTEIN) (protein)

1F7Y	Download File View File

THE CRYSTAL STRUCTURE OF TWO UUCG LOOPS HIGHLIGHTS THE ROLE PLAYED BY 2'-HYDROXYL GROUPS IN ITS UNUSUAL STABILITY

Ennifar, E., Nikouline, A., Serganov, A., Tishchenko, S., Nevskaya, N., Garber, M., Ehresmann, B., Ehresmann, C., Nikonov, S., Dumas, P.

(2000) J Mol Biol 304: 35-42

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus
Macromolecule	30S RIBOSOMAL PROTEIN S15 (protein) 16S RIBOSOMAL RNA FRAGMENT (nucleic acid)
Unique Ligands	K, MG, NA

1FIR	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)

Benas, P., Dumas, P.

(2000) RNA 6: 1347-1355

Released	2001-01-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Bos taurus
Macromolecule	HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) (nucleic acid)
Unique Ligands	MG, NA

1I6U	Download File View File

RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII

Tishchenko, S., Nikulin, A., Fomenkova, N., Nevskaya, N., Nikonov, O., Dumas, P., Moine, H., Ehresmann, B., Ehresmann, C., Piendl, W., Lamzin, V., Garber, M., Nikonov, S.

(2001) J Mol Biol 311: 311-324

Released	2001-08-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	30S RIBOSOMAL PROTEIN S8P (protein) 16S RRNA FRAGMENT (nucleic acid)
Unique Ligands	SO4

1K9W	Download File View File

HIV-1(MAL) RNA Dimerization Initiation Site

Ennifar, E., Walter, P., Ehresmann, B., Ehresmann, C., Dumas, P.

(2001) Nat Struct Biol 8: 1064-1068

Released	2001-11-30
Method	X-RAY DIFFRACTION 3.1 Å
Macromolecule	HIV-1 DIS(Mal)UU RNA (nucleic acid)
Unique Ligands	MG

1KUQ	Download File View File

CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA

Nikulin, A.D., Tishchenko, S., Revtovich, S., Ehresmann, B., Ehresmann, C., Dumas, P., Garber, M., Nikonov, S., Nevskaya, N.

(2004) Biochemistry (Mosc) 69: 1319-1323

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.84 Å
Organisms	Thermus thermophilus
Macromolecule	30S RIBOSOMAL PROTEIN S15 (protein) 16S RIBOSOMAL RNA FRAGMENT (nucleic acid)
Unique Ligands	SO4

1MJI	Download File View File

DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX

Perederina, A., Nevskaya, N., Nikonov, O., Nikulin, A., Dumas, P., Yao, M., Tanaka, I., Garber, M., Gongadze, G., Nikonov, S.

(2002) RNA 8: 1548-1557

Released	2003-01-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Thermus thermophilus
Macromolecule	50S ribosomal protein L5 (protein) 5S rRNA fragment (nucleic acid)
Unique Ligands	K, MG

1NLC	Download File View File

HIV-1 DIS(Mal) duplex Zn-soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2003-05-13
Method	X-RAY DIFFRACTION 1.85 Å
Macromolecule	HIV-1 DIS(MAL) genomic RNA (nucleic acid)
Unique Ligands	ZN

1O3Z	Download File View File

HIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKED

(2003) Nucleic Acids Res 31: 2671-2682

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.65 Å
Macromolecule	HIV-1 DIS(MAL) GENOMIC RNA (nucleic acid)
Unique Ligands	MG, RU

1OK7	Download File View File

A Conserved protein binding-site on Bacterial Sliding Clamps

Burnouf, D.Y., Olieric, V., Wagner, J., Fujii, S., Reinbolt, J., Fuchs, R.P.P., Dumas, P.

(2004) J Mol Biol 335: 1187

Released	2004-07-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE III (protein) DNA POLYMERASE IV (protein)

1WVD	Download File View File

HIV-1 Dis(Mal) Duplex CoCl2-Soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.93 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	CO

1XP7	Download File View File

HIV-1 subtype F genomic RNA Dimerization Initiation Site

(2006) J Mol Biol 356: 771-782

Released	2005-10-18
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPAPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MG, NA, SO4

1XPE	Download File View File

HIV-1 subtype B genomic RNA Dimerization Initiation Site

(2006) J Mol Biol 356: 771-782

Released	2005-10-18
Method	X-RAY DIFFRACTION 1.94 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPAPGPCPGPCPGPCPAPCPGPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	CL, MG, NA, SO4

1XPF	Download File View File

HIV-1 subtype A genomic RNA Dimerization Initiation Site

(2006) J Mol Biol 356: 771-782

Released	2005-10-18
Method	X-RAY DIFFRACTION 2.3 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MG, NA, SO4, SPM

1Y3O	Download File View File

HIV-1 DIS RNA subtype F- Mn soaked

(2006) J Mol Biol 356: 771-782

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.7 Å
Macromolecule	5'-R(CPUP(5BU)PGPCPUPGPAPAPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MN, NA

1Y3S	Download File View File

HIV-1 DIS RNA subtype F- MPD form

(2006) J Mol Biol 356: 771-782

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	5'-R(CPUP(5BU)PGPCPUPGPAPAPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	K, MG

1Y6S	Download File View File

HIV-1 DIS(Mal) duplex Ba-soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	BA

1Y6T	Download File View File

HIV-1 Dis(Mal) Duplex Co Hexamine-Soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.6 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	3CO, NA

1Y73	Download File View File

HIV-1 Dis(Mal) Duplex Pt-Soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MG, PT4

1Y90	Download File View File

HIV-1 Dis(Mal) Duplex Mn-Soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 3.08 Å
Macromolecule	5'-R(CP(5BU)PUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MN

1Y95	Download File View File

HIV-1 Dis(Mal) Duplex Pb-Soaked

(2003) Nucleic Acids Res 31: 2671-2682

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.8 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MG, PB

1Y99	Download File View File

HIV-1 subtype A DIS RNA duplex

Ennifar, E., Yusupov, M., Walter, P., Marquet, R., Ehresmann, B., Ehresmann, C., Dumas, P.

(1999) Structure 7: 1439-1449

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-R(CPUPUPGPCPUPGPAPGPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	MG

1YXP	Download File View File

HIV-1 DIS RNA subtype F- Zn soaked

(2006) J Mol Biol 356: 771-782

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-R(CPUP(5BU)PGPCPUPGPAPAPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	ZN

1ZCI	Download File View File

HIV-1 DIS RNA subtype F- monoclinic form

(2006) J Mol Biol 356: 771-782

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.65 Å
Macromolecule	5'-R(CP(5BU)PUPGPCPUPGPAPAPGPUPGPCPAPCPAPCPAPGPCPAPAP*G)-3' (nucleic acid)
Unique Ligands	K