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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fudo, S."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (9)
	Homo sapiens (3)
	Equus caballus (1)
	Gallus gallus (1)
	Klebsiella pneumoniae (1)
	Serratia marcescens (1)

Taxonomy

	Riboviria (9)
	Eukaryota (5)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (4)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (13)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (12)
	Lyases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (3)

SCOP Classification

	Artifacts (11)
	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)
	All beta proteins (1)

AllSelected

1 to 16 of 16 Structures

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4YYL	Download File View File

Phenolic acid derivative bound to influenza strain H1N1 polymerase subunit PA endonuclease

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2015) Bioorg Med Chem 23: 5466-5475

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.905 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4KN, MN, SO4

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4ZHZ	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region with expelling one of the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P8, MN, SO4

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4ZI0	Download File View File

Endonuclease inhibitor bound to influenza strain H1N1 polymerase acidic subunit N-terminal region without a chelation to the metal ions in the active site

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P9, MN, SO4

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4ZQQ	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Neya, S., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein,Polymerase acidic protein (protein)
Unique Ligands	MN, SO4

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5FDD	Download File View File

Endonuclease inhibitor 1 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein,Polymerase acidic protein (protein)
Unique Ligands	4P8, MN, SO4

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5FDG	Download File View File

Endonuclease inhibitor 3 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	0N8, MN, SO4

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5I13	Download File View File

Endonuclease inhibitor 2 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2016) Biochemistry 55: 2646-2660

Released	2016-02-17
Method	X-RAY DIFFRACTION 2.151 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	4P9, MN, SO4

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5JHT	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with potassium sodium tartrate

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2017) Cryst Growth Des 17: 534-542

Released	2016-05-11
Method	X-RAY DIFFRACTION 1.751 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	MN, TLA

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5JHV	Download File View File

Apo form of influenza strain H1N1 polymerase acidic subunit N-terminal region crystallized with polyethylene glycol 8000

Fudo, S., Yamamoto, N., Nukaga, M., Odagiri, T., Tashiro, M., Hoshino, T.

(2017) Cryst Growth Des 17: 534-542

Released	2016-05-11
Method	X-RAY DIFFRACTION 2.749 Å
Organisms	Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Macromolecule	Polymerase acidic protein (protein)
Unique Ligands	MN

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5ZXW	Download File View File

Crystal structure of human carbonic anhydrase II crystallized by ammonium sulfate

Kitahara, M., Fudo, S., Yoneda, T., Nukaga, M., Hoshino, T.

(2019) Cryst Growth Des 19: 6004-6010

Released	2018-06-13
Method	X-RAY DIFFRACTION 1.316 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	SO4, ZN

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5ZZE	Download File View File

Crystal structure of horse myoglobin crystallized by ammonium sulfate

Kitahara, M., Fudo, S., Yoneda, T., Nukaga, M., Hoshino, T.

(2019) Cryst Growth Des 19: 6004-6010

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.423 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, SO4

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6A10	Download File View File

Crystal structure of hen egg white lysozyme crystallized by ammonium sulfate

Kitahara, M., Fudo, S., Yoneda, T., Nukaga, M., Hoshino, T.

(2019) Cryst Growth Des 19: 6004-6010

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	SO4

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6JE7	Download File View File

Crystal structure of human serum albumin crystallized by ammonium sulfate

Kitahara, M., Fudo, S., Yoneda, T., Nukaga, M., Hoshino, T.

(2019) Cryst Growth Des 19: 6004-6010

Released	2019-03-27
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)

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6JKA	Download File View File

Crystal structure of metallo-beta-lactamse, IMP-1, in complex with a thiazole-bearing inhibitor

Kamo, T., Kuroda, K., Kondo, S., Hayashi, U., Fudo, S., Nukaga, M., Hoshino, T.

(2021) Chem Pharm Bull (Tokyo) 69: 1179-1183

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.006 Å
Organisms	Serratia marcescens
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	BQU, BS0, ZN

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6JKB	Download File View File

Crystal structure of metallo-beta-lactamse, NDM-1, in complex with hydrolyzed ampicillin

Kamo, T., Kuroda, K., Kondo, S., Hayashi, U., Fudo, S., Nukaga, M., Hoshino, T.

(2021) Chem Pharm Bull (Tokyo) 69: 1179-1183

Released	2020-03-25
Method	X-RAY DIFFRACTION 2.444 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	ZN, ZZ7

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8CEG	Download File View File

BAR domain protein FAM92A1 essential for mitochondrial membrane remodeling

Kajander, T., Fudo, S., Yan, Z., Zhao, H.

(2024) Nat Commun 15: 6209-6209

Released	2024-02-21
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	CBY1-interacting BAR domain-containing protein 1 (protein)

1 to 16 of 16 Structures

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