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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Guedez, G."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Arabidopsis thaliana (6)
	Homo sapiens (3)
	Plasmodium berghei (3)
	Borreliella burgdorferi JD1 (1)
	Plasmodium falciparum 3D7 (1)
	Synechococcus elongatus PCC 7942 = FACHB-805 (1)

Taxonomy

	Eukaryota (12)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (7)
	2020 - 2024 (3)
	2025 - 2029 (1)

Enzyme Classification Name

	Lyases (7)
	Transferases (1)
	Hydrolases (1)
	Oxidoreductases (1)

Symmetry Type

	Dihedral (9)
	Cyclic (3)
	Asymmetric (3)

SCOP Classification

Alpha and beta proteins (a/b) (9)

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1 to 14 of 14 Structures

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4ADS \| pdb_00004ads	Download File View File

Crystal structure of plasmodial PLP synthase complex

Guedez, G., Sinning, I., Tews, I.

(2012) Structure 20: 172

Released	2012-01-25
Method	X-RAY DIFFRACTION 3.61 Å
Organisms	Plasmodium berghei Plasmodium falciparum 3D7
Macromolecule	PDX2 PROTEIN (protein) PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE, PUTATIVE (protein)
Unique Ligands	PO4

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4ADT \| pdb_00004adt	Download File View File

Crystal structure of plasmodial PLP synthase

Guedez, G., Sinning, I., Tews, I.

(2012) Structure 20: 172

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Plasmodium berghei
Macromolecule	PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE, PUTATIVE (protein)
Unique Ligands	PO4

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4ADU \| pdb_00004adu	Download File View File

Crystal structure of plasmodial PLP synthase with bound R5P intermediate

Guedez, G., Sinning, I., Tews, I.

(2012) Structure 20: 172

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Plasmodium berghei
Macromolecule	PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE, PUTATIVE (protein)
Unique Ligands	EDO, R5P

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5LNR \| pdb_00005lnr	Download File View File

Crystal structure of Arabidopsis thaliana Pdx1-PLP complex

Rodrigues, M.J., Windeisen, V., Zhang, Y., Guedez, G., Weber, S., Strohmeier, M., Hanes, J.W., Royant, A., Evans, G., Sinning, I., Ealick, S.E., Begley, T.P., Tews, I.

(2017) Nat Chem Biol 13: 290-294

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	GOL, PLP

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5LNS \| pdb_00005lns	Download File View File

Crystal structure of Arabidopsis thaliana Pdx1-R5P complex

Rodrigues, M.J., Windeisen, V., Zhang, Y., Guedez, G., Weber, S., Strohmeier, M., Hanes, J.W., Royant, A., Evans, G., Sinning, I., Ealick, S.E., Begley, T.P., Tews, I.

(2017) Nat Chem Biol 13: 290-294

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	5RP, PO4

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5LNT \| pdb_00005lnt	Download File View File

Crystal structure of Arabidopsis thaliana Pdx1K166R-preI320 complex

Rodrigues, M.J., Windeisen, V., Zhang, Y., Guedez, G., Weber, S., Strohmeier, M., Hanes, J.W., Royant, A., Evans, G., Sinning, I., Ealick, S.E., Begley, T.P., Tews, I.

(2017) Nat Chem Biol 13: 290-294

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.1 (protein)
Unique Ligands	KPR, PO4

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5LNU \| pdb_00005lnu	Download File View File

Crystal structure of Arabidopsis thaliana Pdx1-I320 complex

Rodrigues, M.J., Windeisen, V., Zhang, Y., Guedez, G., Weber, S., Strohmeier, M., Hanes, J.W., Royant, A., Evans, G., Sinning, I., Ealick, S.E., Begley, T.P., Tews, I.

(2017) Nat Chem Biol 13: 290-294

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	KIK, PO4, SO4

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5LNV \| pdb_00005lnv	Download File View File

Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals

Rodrigues, M.J., Windeisen, V., Zhang, Y., Guedez, G., Weber, S., Strohmeier, M., Hanes, J.W., Royant, A., Evans, G., Sinning, I., Ealick, S.E., Begley, T.P., Tews, I.

(2017) Nat Chem Biol 13: 290-294

Released	2017-01-18
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	KIK, PO4, SO4

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5LNW \| pdb_00005lnw	Download File View File

Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex

Rodrigues, M.J., Windeisen, V., Zhang, Y., Guedez, G., Weber, S., Strohmeier, M., Hanes, J.W., Royant, A., Evans, G., Sinning, I., Ealick, S.E., Begley, T.P., Tews, I.

(2017) Nat Chem Biol 13: 290-294

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Arabidopsis thaliana
Macromolecule	Pyridoxal 5'-phosphate synthase subunit PDX1.3 (protein)
Unique Ligands	GOL, HG3, K8P, RP5

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6QMM \| pdb_00006qmm	Download File View File

Crystal structure of Synecochoccus Spermidine Synthase in complex with putrescine, spermidine and MTA

Guedez, G., Pothipongsa, A., Incharoensakdi, A., Salminen, T.A.

(2019) Biochem J 476: 1009-1020

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Synechococcus elongatus PCC 7942 = FACHB-805
Macromolecule	Polyamine aminopropyltransferase (protein)
Unique Ligands	MTA, PUT, PXN, SPD

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6SHU \| pdb_00006shu	Download File View File

Borrelia burgdorferi BmpD nucleoside binding protein bound to adenosine

Guedez, G., Astrand, M., Cuellar, J., Hytonen, J., Salminen, T.A.

(2020) Infect Immun 88:

Released	2020-02-12
Method	X-RAY DIFFRACTION 1.43002869382 Å
Organisms	Borreliella burgdorferi JD1
Macromolecule	Basic membrane protein D (protein)
Unique Ligands	ADN, CL, NA

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8AFO \| pdb_00008afo	Download File View File

Structure of fibronectin 2 and 3 of L1CAM at 2.0 Angstrom

Guedez, G., Loew, C.

(2023) FASEB J 37: e22823-e22823

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Neural cell adhesion molecule L1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8AFP \| pdb_00008afp	Download File View File

Structure of fibronectin 2 and 3 of L1CAM at 3.0 Angstrom

Guedez, G., Loew, C.

(2023) FASEB J 37: e22823-e22823

Released	2023-03-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Neural cell adhesion molecule L1 (protein)
Unique Ligands	NAG

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8S1Z \| pdb_00008s1z	Download File View File

Crystal structure of glycosylated human primary amine oxidase AOC3

Guedez, G., Alix, M., Salminen, T.A.

To be published

Released	2025-01-22
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens
Macromolecule	Membrane primary amine oxidase (protein)
Unique Ligands	CA, CU, NAG
Unique branched monosaccharides	FUC, MAN, NAG

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4ADS | pdb_00004ads

Crystal structure of plasmodial PLP synthase complex

4ADT | pdb_00004adt

Crystal structure of plasmodial PLP synthase

4ADU | pdb_00004adu

Crystal structure of plasmodial PLP synthase with bound R5P intermediate

5LNR | pdb_00005lnr

Crystal structure of Arabidopsis thaliana Pdx1-PLP complex

5LNS | pdb_00005lns

Crystal structure of Arabidopsis thaliana Pdx1-R5P complex

5LNT | pdb_00005lnt

Crystal structure of Arabidopsis thaliana Pdx1K166R-preI320 complex

5LNU | pdb_00005lnu

Crystal structure of Arabidopsis thaliana Pdx1-I320 complex

5LNV | pdb_00005lnv

Crystal structure of Arabidopsis thaliana Pdx1-I320 complex from multiple crystals

5LNW | pdb_00005lnw

Crystal structure of Arabidopsis thaliana Pdx1-I320-G3P complex

6QMM | pdb_00006qmm

Crystal structure of Synecochoccus Spermidine Synthase in complex with putrescine, spermidine and MTA

6SHU | pdb_00006shu

Borrelia burgdorferi BmpD nucleoside binding protein bound to adenosine

8AFO | pdb_00008afo

Structure of fibronectin 2 and 3 of L1CAM at 2.0 Angstrom

8AFP | pdb_00008afp

Structure of fibronectin 2 and 3 of L1CAM at 3.0 Angstrom

8S1Z | pdb_00008s1z

Crystal structure of glycosylated human primary amine oxidase AOC3

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4ADS | pdb_00004ads

4ADT | pdb_00004adt

4ADU | pdb_00004adu

5LNR | pdb_00005lnr

5LNS | pdb_00005lns

5LNT | pdb_00005lnt

5LNU | pdb_00005lnu

5LNV | pdb_00005lnv

5LNW | pdb_00005lnw

6QMM | pdb_00006qmm

6SHU | pdb_00006shu

8AFO | pdb_00008afo

8AFP | pdb_00008afp

8S1Z | pdb_00008s1z