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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Hoffer, E.D."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (21)
	Escherichia coli (18)
	synthetic construct (7)
	Escherichia coli JJ1887 (2)
	Escherichia coli K-12 (2)
	Proteus vulgaris (2)
	Streptomyces alboniger (2)
	Bordetella pertussis (1)
	Escherichia coli O139:H28 str. E24377A (1)
	Escherichia coli S88 (1)

More...

Taxonomy

	Bacteria (26)
	other sequences (7)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (26)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (27)
	RNA (22)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (13)
	3.5 - 4.0 (9)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (18)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (23)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 27 Structures

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5CZP	Download File View File

70S termination complex containing E. coli RF2

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.2999592266 Å
Organisms	Escherichia coli K-12 Escherichia coli str. K-12 substr. MG1655 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5DFE	Download File View File

70S termination complex containing E. coli RF2

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.09997551079 Å
Organisms	Escherichia coli Escherichia coli K-12 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5J30	Download File View File

Thermus thermophilus 70S termination complex containing E. coli RF1

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli JJ1887 Escherichia coli S88 Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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5J3C	Download File View File

Thermus thermophilus 70S termination complex containing E. coli RF1

Hoffer, E.D., Dunham, C.M.

(2016) Cell Rep 17: 11-18

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.04 Å
Organisms	Escherichia coli JJ1887 Escherichia coli O139:H28 str. E24377A Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6BUW	Download File View File

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6BZ6	Download File View File

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6BZ7	Download File View File

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.68 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6BZ8	Download File View File

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Hoffer, E.D., Maehigashi, T., Fagan, C.E., Dunham, C.M.

(2019) Nucleic Acids Res 47: 1557-1563

Released	2018-11-14
Method	X-RAY DIFFRACTION 3.74 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6CEP	Download File View File

Sus scrofa heart L-lactate dehydrogenase ternary complex with NADH and oxamate

Hoffer, E.D., Andrews, B., Dunham, C.M., Dyer, R.B.

(2018) Medchemcomm 9: 1369-1376

Released	2018-06-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sus scrofa
Macromolecule	L-lactate dehydrogenase B chain (protein)
Unique Ligands	NAD, OXM

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6CF1	Download File View File

Proteus vulgaris HigA antitoxin structure

Schureck, M.A., Hoffer, E.D., Ei Cho, S., Dunham, C.M.

(2019) Mol Microbiol 111: 1449-1462

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Proteus vulgaris
Macromolecule	Antitoxin HigA (protein)
Unique Ligands	K

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6CHV	Download File View File

Proteus vulgaris HigA antitoxin bound to DNA

Schureck, M.A., Hoffer, E.D., Onuoha, N., Dunham, C.M.

(2019) Mol Microbiol 111: 1449-1462

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Proteus vulgaris
Macromolecule	Antitoxin HigA (protein) pHigCryst3 (nucleic acid) pHigCryst4 (nucleic acid)
Unique Ligands	MG

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6M9A	Download File View File

Bordetella pertussis globin coupled sensor regulatory domain (BpeGReg)

Rivera, S.R., Hoffer, E.D., Dunham, C.M., Weinert, E.E.

(2018) Inorg Chem 57: 14386-14395

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bordetella pertussis
Macromolecule	Signaling protein (protein)
Unique Ligands	CA, HEM, PEO

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6NDK	Download File View File

Structure of ASLSufA6 A37.5 bound to the 70S A site

Nguyen, H.T., Hoffer, E.D., Dunham, C.M.

(2019) J Biol Chem 294: 5281-5291

Released	2019-02-27
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Escherichia coli Salmonella enterica subsp. enterica serovar Typhimurium Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 7
Unique Ligands	MG, SF4, ZN

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6NSH	Download File View File

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Hoffer, E.D., Maehigashi, T., Subaramanian, S., Hong, S., Dunham, C.M.

(2020) Elife 9:

Released	2020-10-14
Method	X-RAY DIFFRACTION 3.397 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6NTA	Download File View File

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Hoffer, E.D., Maehigashi, T., Subaramanian, S., Hong, S., Dunham, C.M.

(2020) Elife 9:

Released	2020-10-14
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6NUO	Download File View File

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Hoffer, E.D., Subaramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

(2020) Elife 9:

Released	2020-10-14
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6NWY	Download File View File

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Hoffer, E.D., Subaramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

(2020) Elife 9:

Released	2020-10-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6NY6	Download File View File

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.74 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1
Unique Ligands	MG, SF4, ZN

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6O3M	Download File View File

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Hoffer, E.D., Subaramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

(2020) Elife 9:

Released	2020-10-14
Method	X-RAY DIFFRACTION 3.97 Å
Organisms	Escherichia coli Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6OM6	Download File View File

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Hoffer, E.D., Mehrani, A., Keiler, K.C., Stagg, S.M., Dunham, C.M.

(2021) Nat Commun 12: 1799-1799

Released	2021-02-10
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	KKL

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6OSI	Download File View File

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Hoffer, E.D., Subaramanian, S., Hong, S., Maehigashi, T., Dunham, C.M.

(2020) Elife 9:

Released	2020-10-14
Method	X-RAY DIFFRACTION 4.14 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5
Unique Ligands	MG, SF4, ZN

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6OTR	Download File View File

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Pavelich, I.P., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.12 Å
Organisms	Escherichia coli Thermus thermophilus HB8 synthetic construct
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	A3P, MG, SF4, ZN

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6OXA	Download File View File

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Escherichia coli Streptomyces alboniger Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6OXI	Download File View File

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)

Pavelich, I.J., Hoffer, E.D., Maehigashi, T., Dunham, C.M.

(2019) Nucleic Acids Res 47: 10400-10413

Released	2019-08-21
Method	X-RAY DIFFRACTION 3.495 Å
Organisms	Escherichia coli Streptomyces alboniger Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	MG, SF4, ZN

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6PQB	Download File View File

Crystal structure of aminoglycoside-resistance methyltransferase RmtC bound to S-adenosylhomocysteine (SAH)

Nosrati, M., Hoffer, E.D., Conn, G.L.

(2019) J Biol Chem 294: 17642-17653

Released	2019-10-16
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Proteus mirabilis
Macromolecule	16S rRNA (guanine(1405)-N(7))-methyltransferase (protein)
Unique Ligands	SAH

1 to 25 of 27 Structures

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