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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Irie, M."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (17)
	Escherichia coli (3)
	synthetic construct (3)

Taxonomy

	Eukaryota (17)
	Bacteria (3)
	other sequences (3)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (6)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (3)
	2015 - 2019 (7)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (9)
	Hydrolases (6)
	Lyases (3)

Symmetry Type

	Asymmetric (17)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	All beta proteins (1)

AllSelected

1 to 20 of 20 Structures

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2Z8I	Download File View File

Crystal Structure of Escherichia coli Gamma-Glutamyltranspeptidase in Complex with Azaserine

Wada, K., Irie, M., Fukuyama, K.

(2008) J Mol Biol 380: 361-372

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	Gamma-glutamyltranspeptidase (protein)
Unique Ligands	AZS

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2Z8J	Download File View File

Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Azaserine prepared in the dark

Wada, K., Irie, M., Fukuyama, K.

(2008) J Mol Biol 380: 361-372

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	Gamma-glutamyltranspeptidase (protein)
Unique Ligands	AZS

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2Z8K	Download File View File

Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Acivicin

Wada, K., Irie, M., Fukuyama, K.

(2008) J Mol Biol 380: 361-372

Released	2008-06-24
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	Gamma-glutamyltranspeptidase (protein)
Unique Ligands	AVN

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3VW9	Download File View File

Human Glyoxalase I with an N-hydroxypyridone inhibitor

Fukami, T.A., Irie, M., Matsuura, T.

(2012) Bioorg Med Chem Lett 22: 7486-7489

Released	2012-12-12
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Lactoylglutathione lyase (protein)
Unique Ligands	EPE, HPJ, ZN

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3W0T	Download File View File

Human Glyoxalase I with an N-hydroxypyridone derivative inhibitor

Fukami, T.A., Irie, M., Matsuura, T.

To be published

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.351 Å
Organisms	Homo sapiens
Macromolecule	Lactoylglutathione lyase (protein)
Unique Ligands	EPE, HPU, ZN

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3W0U	Download File View File

human Glyoxalase I with an N-hydroxypyridone inhibitor

Fukami, T.A., Irie, M., Matsuura, T.

To be published

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Lactoylglutathione lyase (protein)
Unique Ligands	HPW, ZN

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5B71	Download File View File

Crystal structure of complement C5 in complex with SKY59

Irie, M., Shimizu, Y., Sampei, Z., Fukuzawa, T.

(2017) Sci Rep 7: 1080-1080

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Complement C5 beta chain (protein) SKY59 Fab heavy chain (protein) SKY59 Fab light chain (protein)

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5GJD	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 2

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Chem Pharm Bull (Tokyo) 64: 1622-1629

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6V3

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5GJF	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 3

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Chem Pharm Bull (Tokyo) 64: 1622-1629

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6V4

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5GJG	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 4

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Chem Pharm Bull (Tokyo) 64: 1622-1629

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6V5

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5JGA	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 11c

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Bioorg Med Chem 24: 4206-4217

Released	2016-07-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6KC

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5JGB	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 10

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Bioorg Med Chem 24: 4206-4217

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6JV

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5JGD	Download File View File

Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 12

Irie, M., Nakamura, M., Fukami, T.A., Matsuura, T., Morishima, K.

(2016) Bioorg Med Chem 24: 4206-4217

Released	2016-07-27
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Homo sapiens
Macromolecule	TAK1 kinase - TAB1 chimera fusion protein (protein)
Unique Ligands	6KD

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7YUZ	Download File View File

Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP8784

Irie, M., Fukami, T.A., Tanada, M., Ohta, A., Torizawa, T.

(2023) J Am Chem Soc 145: 24035-24051

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.878 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AP8784 (protein) Isoform 2B of GTPase KRas (protein)
Unique Ligands	GDP, IOD, MG

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7YV1	Download File View File

Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor LUNA18 and KA30L Fab

Irie, M., Fukami, T.A., Matsuo, A., Saka, K., Nishimura, M., Saito, H., Torizawa, T., Tanada, M., Ohta, A.

(2023) J Am Chem Soc 145: 24035-24051

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.454 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Isoform 2B of GTPase KRas (protein) KA30L Fab H-chain (protein) KA30L Fab L-chain (protein) LUNA18 (protein)
Unique Ligands	GDP, MG

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8JJS	Download File View File

Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP10343

Irie, M., Fukami, T.A., Tanada, M., Ohta, A., Torizawa, T.

(2023) J Am Chem Soc 145: 16610-16620

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.534 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Isoform 2B of GTPase KRas (protein) MAA-ILE-SAR-SAR-7T2-SAR-IAE-LEU-MEA-MLE-7TK (protein)
Unique Ligands	GDP, MG, SO4

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8W83	Download File View File

HLA-DQ2.5-alpha1 gliadin peptide in complex with DQN0344AE02

Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.

(2023) Nat Commun 14: 8502-8502

Released	2023-11-08
Method	X-RAY DIFFRACTION 2.818 Å
Organisms	Homo sapiens
Macromolecule	DQN0344AE02 Fab heavy chain (protein) DQN0344AE02 Fab light chain (protein) HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) MHC class II HLA-DQ-beta-1 - alpha1 gliadin peptide chimeric protein (protein)
Unique Ligands	NAG

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8W84	Download File View File

HLA-DQ2.5-alpha2 gliadin peptide in complex with DQN0344AE02

Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.

(2023) Nat Commun 14: 8502-8502

Released	2023-11-08
Method	X-RAY DIFFRACTION 2.105 Å
Organisms	Homo sapiens
Macromolecule	DQN0344AE02 Fab heavy chain (protein) DQN0344AE02 Fab light chain (protein) HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) MHC class II HLA-DQ-beta-1 - alpha2 gliadin peptide chimeric protein (protein)
Unique Ligands	NAG

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8W85	Download File View File

HLA-DQ2.5-gamma2 gliadin peptide in complex with DQN0385AE01

Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.

(2023) Nat Commun 14: 8502-8502

Released	2023-11-08
Method	X-RAY DIFFRACTION 2.769 Å
Organisms	Homo sapiens
Macromolecule	DQN0385AE01 Fab heavy chain (protein) DQN0385AE01 Fab light chain (protein) HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) MHC class II HLA-DQ-beta-1 - gamma2 gliadin peptide chimeric protein (protein)
Unique Ligands	NAG

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8W86	Download File View File

HLA-DQ2.5-B/C hordein peptide in complex with DQN0385AE02

Irie, M., Tsushima, T., Teranishi-Ikawa, Y., Takahashi, N., Ishii, S., Okura, Y., Fukami, T.A., Torizawa, T.

(2023) Nat Commun 14: 8502-8502

Released	2023-11-08
Method	X-RAY DIFFRACTION 2.236 Å
Organisms	Homo sapiens
Macromolecule	DQN0385AE02 Fab heavy chain (protein) DQN0385AE02 Fab light chain (protein) HLA class II histocompatibility antigen, DQ alpha 1 chain (protein) MHC class II HLA-DQ-beta-1 - B/C hordein peptide chimeric protein (protein)
Unique Ligands	NAG

1 to 20 of 20 Structures

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