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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kenjic, N."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Vibrio cholerae (7)
	Homo sapiens (4)
	Pseudomonas aeruginosa PAO1 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (8)
	Eukaryota (4)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (11)

Enzyme Classification Name

	Lyases (7)
	Transferases (3)
	Hydrolases (2)

Symmetry Type

	Asymmetric (4)
	Cyclic (9)

AllSelected

1 to 12 of 12 Structures

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6CUL \| pdb_00006cul	Download File View File

PvdF of pyoverdin biosynthesis is a structurally unique N10-formyltetrahydrofolate-dependent formyltransferase

Kenjic, N., Hoag, M.R., Moraski, G.C., Caperelli, C.A., Moran, G.R., Lamb, A.L.

(2019) Arch Biochem Biophys 664: 40-50

Released	2019-02-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Pyoverdine synthetase F (protein)
Unique Ligands	CIT, FGD

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6UMQ \| pdb_00006umq	Download File View File

Structure of DUF89

Perry, J.J., Kenjic, N., Dennis, T.N.

(2020) J Struct Biol 212: 107576-107576

Released	2020-07-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Damage-control phosphatase DUF89 (protein)
Unique Ligands	MG

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6UMR \| pdb_00006umr	Download File View File

Structure of DUF89 - D291A mutant

Perry, J.J., Kenjic, N., Dennis, T.N.

(2020) J Struct Biol 212: 107576-107576

Released	2020-07-29
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	Damage-control phosphatase DUF89 (protein)
Unique Ligands	MG

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6VBX \| pdb_00006vbx	Download File View File

Crystal structure of Mcl-1 in complex with 138E12 peptide, Lys-covalent antagonist

Pellecchia, M., Perry, J.J., Kenjic, N., Assar, Z.

(2021) J Med Chem 64: 4903-4912

Released	2020-12-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein) Synthetic peptide (protein)

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7UEZ \| pdb_00007uez	Download File View File

Apo RibB from Vibrio cholera

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)

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7UF0 \| pdb_00007uf0	Download File View File

RibB from Vibrio cholera bound with D-ribulose-5-phosphate (D-Ru5P)

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)
Unique Ligands	5RP

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7UF1 \| pdb_00007uf1	Download File View File

RibB from Vibrio cholera bound with D-Ribose-5-phosphate (D-R5P) and manganese

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)
Unique Ligands	MN, R5P

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7UF2 \| pdb_00007uf2	Download File View File

RibB from Vibrio cholera bound with D-xylulose-5-phosphate (D-Xy5P) and manganese

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)
Unique Ligands	5SP, EDO, MN

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7UF3 \| pdb_00007uf3	Download File View File

RibB from Vibrio cholera bound with L-xylulose-5-phosphate (L-Xy5P) and manganese

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)
Unique Ligands	MN, N3U

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7UF4 \| pdb_00007uf4	Download File View File

RibB from Vibrio cholera bound with intermediate 1 of the reaction cycle and D-ribulose-5-phosphate (D-Ru5P)

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)
Unique Ligands	5RP, EDO, MN, N46

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7UF5 \| pdb_00007uf5	Download File View File

RibB from Vibrio cholera bound with intermediate 2 in the reaction cycle and the products DHBP and formate

Kenjic, N., Meneely, K.M., Lamb, A.L.

(2022) J Am Chem Soc 144: 12769-12780

Released	2022-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio cholerae
Macromolecule	3,4-dihydroxy-2-butanone 4-phosphate synthase (protein)
Unique Ligands	FMT, MN, N4O, N52

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8GL9 \| pdb_00008gl9	Download File View File

Co-crystal structure of caPCNA bound to AOH1160 derivative 1LE

Jossart, J., Kenjic, N., Malkas, L.H., Hickey, R.J., Perry, J.J.

(2023) Cell Chem Biol 30: 1235

Released	2023-07-26
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	Proliferating cell nuclear antigen (protein)
Unique Ligands	CL, ZQW

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6CUL | pdb_00006cul

PvdF of pyoverdin biosynthesis is a structurally unique N10-formyltetrahydrofolate-dependent formyltransferase

6UMQ | pdb_00006umq

Structure of DUF89

6UMR | pdb_00006umr

Structure of DUF89 - D291A mutant

6VBX | pdb_00006vbx

Crystal structure of Mcl-1 in complex with 138E12 peptide, Lys-covalent antagonist

7UEZ | pdb_00007uez

Apo RibB from Vibrio cholera

7UF0 | pdb_00007uf0

RibB from Vibrio cholera bound with D-ribulose-5-phosphate (D-Ru5P)

7UF1 | pdb_00007uf1

RibB from Vibrio cholera bound with D-Ribose-5-phosphate (D-R5P) and manganese

7UF2 | pdb_00007uf2

RibB from Vibrio cholera bound with D-xylulose-5-phosphate (D-Xy5P) and manganese

7UF3 | pdb_00007uf3

RibB from Vibrio cholera bound with L-xylulose-5-phosphate (L-Xy5P) and manganese

7UF4 | pdb_00007uf4

RibB from Vibrio cholera bound with intermediate 1 of the reaction cycle and D-ribulose-5-phosphate (D-Ru5P)

7UF5 | pdb_00007uf5

RibB from Vibrio cholera bound with intermediate 2 in the reaction cycle and the products DHBP and formate

8GL9 | pdb_00008gl9

Co-crystal structure of caPCNA bound to AOH1160 derivative 1LE

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6CUL | pdb_00006cul

6UMQ | pdb_00006umq

6UMR | pdb_00006umr

6VBX | pdb_00006vbx

7UEZ | pdb_00007uez

7UF0 | pdb_00007uf0

7UF1 | pdb_00007uf1

7UF2 | pdb_00007uf2

7UF3 | pdb_00007uf3

7UF4 | pdb_00007uf4

7UF5 | pdb_00007uf5

8GL9 | pdb_00008gl9