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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Krebs, C."

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Atropa belladonna (10)
	Bacteroides uniformis (5)
	Caulobacter vibrioides (3)
	Chlamydia trachomatis (2)
	Pyrococcus horikoshii (2)
	uncultured bacterium HF130_AEPn_1 (2)

Taxonomy

	Bacteria (12)
	Eukaryota (10)
	Archaea (2)

Experimental Method

X-RAY DIFFRACTION (24)

Polymer Entity Type

	Protein (24)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (13)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (6)
	2020 - 2024 (15)

Enzyme Classification Name

	Oxidoreductases (14)
	Transferases (7)
	Lyases (3)

Symmetry Type

	Asymmetric (17)
	Cyclic (7)

SCOP Classification

	All alpha proteins (2)
	Artifacts (2)

AllSelected

1 to 24 of 24 Structures

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3EPM	Download File View File

Crystal structure of Caulobacter crescentus ThiC

Li, S., Chatterjee, A., Zhang, Y., Grove, T.L., Lee, M., Krebs, C., Booker, S.J., Begley, T.P., Ealick, S.E.

(2008) Nat Chem Biol 4: 758-765

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.793 Å
Organisms	Caulobacter vibrioides
Macromolecule	Thiamine biosynthesis protein thiC (protein)
Unique Ligands	HMH, SO4, ZN

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3EPN	Download File View File

Crystal structure of Caulobacter crescentus ThiC complexed with imidazole ribonucleotide

Li, S., Chatterjee, A., Zhang, Y., Grove, T.L., Lee, M., Krebs, C., Booker, S.J., Begley, T.P., Ealick, S.E.

(2008) Nat Chem Biol 4: 758-765

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Caulobacter vibrioides
Macromolecule	Thiamine biosynthesis protein thiC (protein)
Unique Ligands	IRN

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3EPO	Download File View File

Crystal structure of Caulobacter crescentus ThiC complexed with HMP-P

Li, S., Chatterjee, A., Zhang, Y., Grove, T.L., Lee, M., Krebs, C., Booker, S.J., Begley, T.P., Ealick, S.E.

(2008) Nat Chem Biol 4: 758-765

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Caulobacter vibrioides
Macromolecule	Thiamine biosynthesis protein thiC (protein)
Unique Ligands	MP5

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3LZC	Download File View File

Crystal structure of Dph2 from Pyrococcus horikoshii

Zhang, Y., Zhu, X., Torelli, A.T., Lee, M., Dzikovski, B., Koralewski, R.M., Wang, E., Freed, J., Krebs, C., Lin, H., Ealick, S.E.

(2010) Nature 465: 891-896

Released	2010-06-23
Method	X-RAY DIFFRACTION 2.261 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Dph2 (protein)

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3LZD	Download File View File

Crystal structure of Dph2 from Pyrococcus horikoshii with 4Fe-4S cluster

Torelli, A.T., Zhang, Y., Zhu, X., Lee, M., Dzikovski, B., Koralewski, R.M., Wang, E., Freed, J., Krebs, C., Lin, H., Ealick, S.E.

(2010) Nature 465: 891-896

Released	2010-07-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Dph2 (protein)
Unique Ligands	SF4, SO4

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4D8F	Download File View File

Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 1 - high Mn)

Dassama, L.M.K., Boal, A.K., Krebs, C., Rosenzweig, A.C., Bollinger Jr., J.M.

(2012) J Am Chem Soc 134: 2520-2523

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Chlamydia trachomatis
Macromolecule	Ribonucleoside-diphosphate reductase subunit beta (protein)
Unique Ligands	ACY, FE, MN

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4D8G	Download File View File

Chlamydia trachomatis NrdB with a Mn/Fe cofactor (procedure 2 - low Mn)

Dassama, L.M.K., Boal, A.K., Krebs, C., Rosenzweig, A.C., Bollinger Jr., J.M.

(2012) J Am Chem Soc 134: 2520-2523

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Chlamydia trachomatis
Macromolecule	Ribonucleoside-diphosphate reductase subunit beta (protein)
Unique Ligands	FE, MN

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4N6W	Download File View File

X-Ray Crystal Structure of Citrate-bound PhnZ

Worsdorfer, B., Lingaraju, M., Yennawar, N.H., Boal, A.K., Krebs, C., Bollinger Jr, J.M., Pandelia, M.E.

(2013) Proc Natl Acad Sci U S A 110: 18874-18879

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	uncultured bacterium HF130_AEPn_1
Macromolecule	Predicted HD phosphohydrolase PhnZ (protein)
Unique Ligands	FE, FLC

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4N71	Download File View File

X-Ray Crystal Structure of 2-amino-1-hydroxyethylphosphonate-bound PhnZ

Woersdoerfer, B., Lingaraju, M., Yennawar, N., Boal, A.K., Krebs, C., Bollinger Jr, J.M., Pandelia, M.-E.

(2013) Proc Natl Acad Sci U S A 110: 18874-18879

Released	2013-11-27
Method	X-RAY DIFFRACTION 2.984 Å
Organisms	uncultured bacterium HF130_AEPn_1
Macromolecule	Predicted HD phosphohydrolase PhnZ (protein)
Unique Ligands	FE, ODV

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7MJV	Download File View File

MiaB in the complex with s-adenosylmethionine and RNA

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

(2021) Nature 597: 566-570

Released	2021-09-15
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Bacteroides uniformis
Macromolecule	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (protein) RNA (5'-R(PAPGPGPAPCPUPGPAPAP(ZJS)PAPUPCPCP*U)-3') (nucleic acid)
Unique Ligands	F3S, MG, SAM, SF4

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7MJW	Download File View File

Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

(2021) Nature 597: 566-570

Released	2021-09-15
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bacteroides uniformis
Macromolecule	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (protein) RNA (5'-R(GPGPAPCPUPGPAPAP(MIA)PAPUPCP*C)-3') (nucleic acid)
Unique Ligands	5AD, MET, MG, SF4, ZKP

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7MJX	Download File View File

MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

(2021) Nature 597: 566-570

Released	2021-09-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacteroides uniformis
Macromolecule	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (protein) RNA (5'-R(GPGPAPCPUPGPAPAP(MIA)PAPUPCP*C)-3') (nucleic acid)
Unique Ligands	5AD, F3S, MET, NA, SF4, TRS

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7MJY	Download File View File

MiaB in the complex with s-adenosyl-L-homocysteine and RNA

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

(2021) Nature 597: 566-570

Released	2021-09-15
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Bacteroides uniformis
Macromolecule	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (protein) RNA (5'-R(PUPAPUPUP*C)-3') (nucleic acid)
Unique Ligands	CL, F3S, PEG, PGE, SAH, SF4

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7MJZ	Download File View File

The structure of MiaB with pentasulfide bridge

Esakova, O.A., Grove, T.L., Yennawar, N.H., Arcinas, A.J., Wang, B., Krebs, C., Almo, S.C., Booker, S.J.

(2021) Nature 597: 566-570

Released	2021-09-15
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Bacteroides uniformis
Macromolecule	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (protein)
Unique Ligands	NA, PS5, SF4

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8CV8	Download File View File

Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.532 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	AKG, EDO, FE2, FMT, HYO, SR

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8CV9	Download File View File

Structure of Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	EDO, FMT, HYO, O, SIN, SR, V

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8CVA	Download File View File

Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, succinate, and 6-OH-hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.581 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	EDO, FE2, FMT, OVR, SIN, SR

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8CVB	Download File View File

Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and 6-OH-hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.532 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	AKG, EDO, FE2, FMT, OVR, SR

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8CVC	Download File View File

Structure of Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and 6-OH-hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.791 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	EDO, FMT, O, OVR, SIN, SR, V

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8CVD	Download File View File

Structure of Hyoscyamine 6-beta Hydroxylase in complex with iron, succinate, and scopolamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.717 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	EDO, FE2, FMT, OW0, SIN, SR

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8CVE	Download File View File

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	AKG, EDO, FE2, FMT, HYO, SR

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8CVF	Download File View File

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.532 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	EDO, FMT, HYO, O, SIN, SR, V

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8CVG	Download File View File

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with iron, 2-oxoglutarate, and 6-OH-hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	AKG, EDO, FE2, FMT, OVR, SR

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8CVH	Download File View File

Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and 6-OH-hyoscyamine

Wenger, E.W., Boal, A.K., Bollinger, J.M., Krebs, C.

(2024) J Am Chem Soc 146: 24271-24287

Released	2023-11-22
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Atropa belladonna
Macromolecule	Hyoscyamine 6-beta-hydroxylase (protein)
Unique Ligands	EDO, FMT, OVR, SIN, SR, V