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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Logan, D."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (9)
	Streptococcus agalactiae serogroup III (3)
	Acinetobacter baumannii (1)
	Bacillus subtilis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (9)
	Bacteria (5)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (4)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

	Oxidoreductases (5)
	Transferases (1)

Symmetry Type

	Asymmetric (8)
	Cyclic (6)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a/b) (3)

AllSelected

1 to 14 of 14 Structures

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2VT3	Download File View File

Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex

Wang, E., Bauer, M.C., Rogstam, A., Linse, S., Logan, D., von Wachenfeldt, C.

(2008) Mol Microbiol 69: 466-478

Released	2008-09-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX (protein)
Unique Ligands	ATP

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3KEO	Download File View File

Crystal Structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus agalactiae serogroup III
Macromolecule	Redox-sensing transcriptional repressor rex (protein)
Unique Ligands	CL, MG, NAD

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3KEQ	Download File View File

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus agalactiae serogroup III
Macromolecule	Redox-sensing transcriptional repressor rex (protein)
Unique Ligands	NAD

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3KET	Download File View File

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus agalactiae serogroup III synthetic construct
Macromolecule	Redox-sensing transcriptional repressor rex (protein) DNA (5'-D(APAPTPTPGPTPGPAPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPTPTPCPAPCPAPAPTPT)-3') (nucleic acid)
Unique Ligands	MG, NAD

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4BFC	Download File View File

Crystal structure of the C-terminal CMP-Kdo binding domain of WaaA from Acinetobacter baumannii

Kimbung, Y.R., Hakansson, M., Logan, D., Wang, P.F., Schulz, M., Mamat, U., Woodard, R.W.

To be published

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Acinetobacter baumannii
Macromolecule	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE (protein)
Unique Ligands	BME, SO4

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5J07	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P1/2

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn] (protein)

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5J0C	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P2/3

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn],Superoxide dismutase [Cu-Zn],OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] (protein)

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5J0F	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P4/5

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn],OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	GOL

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5J0G	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, loops IV and VII deleted, apo form, circular permutant P7/8

Wang, H., Lang, L., Logan, D., Danielsson, J., Oliveberg, M.

(2016) J Am Chem Soc 138: 15571-15579

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn] (protein)

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6FLH	Download File View File

Monomeric Human Cu,Zn Superoxide dismutase, SOD1 7+7, apo form

Wang, H., Yang, F., Logan, D., Oliveberg, M.

(2018) J Am Chem Soc 140: 16570-16579

Released	2018-11-07
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	GOL, SO4

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7AMA	Download File View File

IL-17A in complex with small molecule modulators

Hakansson, M., Kimbung, R., Logan, D., Walse, U.B., de Groot, M.J., Andrews, M.D., Dack, K.N., Lambert, M.

(2022) J Med Chem 65: 8828-8842

Released	2022-04-20
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-17A (protein)
Unique Ligands	RMK

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7AMG	Download File View File

IL-17A in complex with small molecule modulators

Hakansson, M., Kimbung, R., Logan, D., Walse, U.B., de Groot, M.J., Andrews, M.D., Dack, K.N., Lambert, M.

(2022) J Med Chem 65: 8828-8842

Released	2022-04-20
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-17A (protein)
Unique Ligands	RMQ

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7ZXK	Download File View File

Human IL-27 in complex with neutralizing SRF388 FAb fragment

Bloch, Y., Skladanowska, K., Strand, J., Welin, M., Logan, D., Hill, J., Savvides, S.N.

(2022) Cell Rep 41: 111490-111490

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-27 subunit alpha (protein) Interleukin-27 subunit beta (protein) SRF388 Heavy Chain (protein) SRF388 Light Chain (protein)
Unique Ligands	NAG

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8P4Z	Download File View File

Crystal structure of the human CDK7 kinase domain in complex with LDC4297

Laursen, M., Caing-Carlsson, R., Houssari, R., Javadi, A., Kimbung, Y.R., Murina, V., Orozco-Rodriguez, J.M., Svensson, A., Welin, M., Logan, D., Svensson, B., Walse, B.

To be published

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-dependent kinase 7 (protein)
Unique Ligands	1PE, GOL, PGE, WZ8

1 to 14 of 14 Structures

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Experimental Method

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