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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Mackay, D."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Streptococcus pneumoniae TIGR4 (5)
	Bacteroides thetaiotaomicron VPI-5482 (3)
	Clostridium perfringens (2)
	Ostrinia furnacalis (2)
	Bacillus subtilis (1)
	Bacteroides thetaiotaomicron (1)
	Burkholderia cenocepacia (1)
	Homo sapiens (1)
	Paenibacillus sp. TS12 (1)
	Vibrio cholerae (1)

Taxonomy

	Bacteria (15)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (11)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (8)
	2015 - 2019 (6)

Enzyme Classification Name

Hydrolases (17)

Symmetry Type

	Asymmetric (13)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)
	Artifacts (1)

AllSelected

1 to 18 of 18 Structures

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2CBJ	Download File View File

Structure of the Clostridium perfringens NagJ family 84 glycoside hydrolase, a homologue of human O-GlcNAcase in complex with PUGNAc

Rao, F.V., Dorfmueller, H.C., Villa, F., Allwood, M., Eggleston, I.M., van Aalten, D.M.F.

(2006) EMBO J 25: 1569-1578

Released	2006-02-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Clostridium perfringens
Macromolecule	HYALURONIDASE (protein)
Unique Ligands	CL, OAN

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2OXN	Download File View File

Vibrio cholerae family 3 glycoside hydrolase (NagZ) in complex with PUGNAc

Balcewich, M., Mark, B.L.

(2007) J Biol Chem 282: 21382-21391

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	Beta-hexosaminidase (protein)
Unique Ligands	OAN

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2VCB	Download File View File

Family 89 Glycoside Hydrolase from Clostridium perfringens in complex with PUGNAc

Ficko-Blean, E., Stubbs, K.A., Berg, O., Vocadlo, D.J., Boraston, A.B.

(2008) Proc Natl Acad Sci U S A 105: 6560

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium perfringens
Macromolecule	ALPHA-N-ACETYLGLUCOSAMINIDASE (protein)
Unique Ligands	CA, OAN

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2VVS	Download File View File

BtGH84 structure in complex with PUGNAc

Macauley, M.S., Bubb, A., Martinez-Fleites, C., Davies, G.J., Vocadlo, D.J.

(2008) J Biol Chem 283: 34687

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	OAN

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3NVD	Download File View File

Structure of YBBD in complex with pugnac

Diederichs, K.

(2010) J Biol Chem 285: 35675-35684

Released	2010-08-04
Method	X-RAY DIFFRACTION 1.836 Å
Organisms	Bacillus subtilis
Macromolecule	Uncharacterized lipoprotein ybbD (protein)
Unique Ligands	ACT, NA, OAN, PG4

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3OZP	Download File View File

Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with PUGNAc

Zhang, H., Liu, T., Liu, F., Shen, X., Yang, Q.

(2011) Biochem J 438: 467-474

Released	2011-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ostrinia furnacalis
Macromolecule	N-acetylglucosaminidase (protein)
Unique Ligands	OAN

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3S6T	Download File View File

Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 V327G complexed with PUGNAc

Zhang, H., Liu, T., Yang, Q., Shen, X.

(2011) Biochem J 438: 467-474

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Ostrinia furnacalis
Macromolecule	N-acetylglucosaminidase (protein)
Unique Ligands	OAN

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3SUT	Download File View File

Crystal structure of beta-hexosaminidase from Paenibacillus sp. TS12 in complex with PUGNAc

Sumida, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2012) Org Biomol Chem 10: 2607-2612

Released	2012-06-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Paenibacillus sp. TS12
Macromolecule	Beta-hexosaminidase (protein)
Unique Ligands	OAN, SO4

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4AZ6	Download File View File

Differential inhibition of the tandem GH20 catalytic modules in the pneumococcal exo-beta-D-N-acetylglucosaminidase, StrH

Pluvinage, B., Stubbs, K.A., Vocadlo, D.J., Boraston, A.B.

(2013) Org Biomol Chem 11: 7907

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.36 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	EDO, OAN, P15

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4AZB	Download File View File

Differential inhibition of the tandem GH20 catalytic modules in the pneumococcal exo-beta-D-N-acetylglucosaminidase, StrH

Pluvinage, B., Stubbs, K.A., Vocadlo, D.J., Boraston, A.B.

(2013) Org Biomol Chem 11: 7907

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	EDO, OAN, SO4

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4AZG	Download File View File

Differential inhibition of the tandem GH20 catalytic modules in the pneumococcal exo-beta-D-N-acetylglucosaminidase, StrH

Pluvinage, B., Stubbs, K.A., Vocadlo, D.J., Boraston, A.B.

(2013) Org Biomol Chem 11: 7907

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	ACT, EDO, OAN

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4AZI	Download File View File

Differential inhibition of the tandem GH20 catalytic modules in the pneumococcal exo-beta-D-N-acetylglucosaminidase, StrH

Pluvinage, B., Stubbs, K.A., Vocadlo, D.J., Boraston, A.B.

(2013) Org Biomol Chem 11: 7907

Released	2013-07-10
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	BETA-N-ACETYLHEXOSAMINIDASE (protein)
Unique Ligands	BCN, BR, EDO, OAN

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4UR9	Download File View File

Structure of ligand bound glycosylhydrolase

Darby, J.F., Landstroem, J., Roth, C., He, Y., Schultz, M., Davies, G.J., Hubbard, R.E.

(2014) Angew Chem Int Ed Engl 53: 13419

Released	2015-02-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	O-GLCNACASE BT_4395 (protein)
Unique Ligands	BK9, CA, OAN

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5A6B	Download File View File

GH20C, Beta-hexosaminidase from Streptococcus pneumoniae in complex with PUGNAc

Cid, M., Robb, C.S., Higgins, M.A., Boraston, A.B.

(2015) J Biol Chem 290: 30888-30900

Released	2015-09-23
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	N-ACETYL-BETA-D-GLUCOSAMINIDASE (protein)
Unique Ligands	MG, OAN

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5MI5	Download File View File

BtGH84 mutant with covalent modification by MA3 in complex with PUGNAc

Darby, J.F., Davies, G.J., Hubbard, R.E.

(2017) Chem Sci 8: 7772-7779

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GlcNAcase BT_4395 (protein)
Unique Ligands	7NQ, CA, OAN

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5MI7	Download File View File

BtGH84 mutant with covalent modification by MA4 in complex with PUGNAc

Darby, J.F., Davies, G.J., Hubbard, R.E.

(2017) Chem Sci 8: 7772-7779

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	O-GlcNAcase BT_4395 (protein)
Unique Ligands	7NT, CA, OAN

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5UHO	Download File View File

Crystal structure of the core catalytic domain of human O-GlcNAcase complexed with PUGNAc

Klein, D.J., Elsen, N.L.

To be published

Released	2017-03-29
Method	X-RAY DIFFRACTION 3.21 Å
Organisms	Homo sapiens
Macromolecule	O-GlcNAcase TIM-barrel domain (protein) O-GlcNAcase stalk domain (protein)
Unique Ligands	OAN

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5UTQ	Download File View File

Crystal structure of Burkholderia cenocepacia family 3 glycoside hydrolase (NagZ) bound to PUGNAc

Vadlamani, G., Mark, B.L.

(2017) Protein Sci 26: 1161-1170

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Burkholderia cenocepacia
Macromolecule	Beta-hexosaminidase (protein)
Unique Ligands	MES, OAN

1 to 18 of 18 Structures

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