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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Manoharan, M."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Escherichia coli (3)
	Human betacoronavirus 2c EMC/2012 (1)
	synthetic construct (1)

Taxonomy

	Bacteria (3)
	Riboviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (37)

Polymer Entity Type

	DNA (29)
	Protein (4)
	RNA (4)
	NA-hybrid (3)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (15)
	1.5 - 2.0 (14)
	2.0 - 2.5 (3)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (18)
	2005 - 2009 (10)
	2010 - 2014 (4)
	2015 - 2019 (1)

Enzyme Classification Name

Transferases (3)

Symmetry Type

Asymmetric (4)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 37 Structures

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1D8Y	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I (protein) D(T)19 OLIGOMER (nucleic acid)
Unique Ligands	SO4, ZN

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1D9D	Download File View File

CRYSTALL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH SHORT DNA FRAGMENT CARRYING 2'-0-AMINOPROPYL-RNA MODIFICATIONS 5'-D(TCG)-AP(AUC)-3'

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I (protein) 5'-D(TPCPGP)-R(AP(U31)P*(C31))-3' (hybrid)
Unique Ligands	MG, SO4, ZN

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1D9F	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3'

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	DNA POLYMERASE I (protein) DNA/RNA (5'-D(TPTP)-R((U31)P)-D(T)-3') (hybrid)
Unique Ligands	SO4, ZN

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1D9H	Download File View File

Structural origins of the exonuclease resistance of a zwitterionic RNA

Teplova, M., Wallace, S.T., Tereshko, V., Minasov, G., Simons, A.M., Cook, P.D., Manoharan, M., Egli, M.

(1999) Proc Natl Acad Sci U S A 96: 14240-14245

Released	1999-12-02
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA/RNA (5'-D(GPCPGPTPAP)-R((U31)P)-D(APCPGPC)-3') (hybrid)

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1DPL	Download File View File

A-DNA DECAMER GCGTA(T23)TACGC WITH INCORPORATED 2'-METHOXY-3'-METHYLENEPHOSPHATE-THYMIDINE

Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.

(1998) Biopolymers 48: 234-252

Released	2000-04-04
Method	X-RAY DIFFRACTION 0.83 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	MG, SPM

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1DPN	Download File View File

B-DODECAMER CGCGAA(TAF)TCGCG WITH INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE

Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C.M., Miller, R., Maier, M.A., An, H., Dan Cook, P., Manoharan, M.

(1998) Biopolymers 48: 234-252

Released	2000-04-04
Method	X-RAY DIFFRACTION 0.95 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAP(TAF)PTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	MG

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1I0F	Download File View File

1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-AMINOOXYETHYL THYMINE IN PLACE OF T6, BA-FORM

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(127)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	BA

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1I0G	Download File View File

1.45 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, MEDIUM NA-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.45 Å
Macromolecule	5'-D(GPCPGPTPAP(125)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	NA

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1I0J	Download File View File

1.06 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE (T23) THYMINE IN PLACE OF T6, HIGH CS-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.06 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	CS

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1I0K	Download File View File

1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM CS-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.05 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	CS

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1I0M	Download File View File

1.05 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, HIGH RB-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.05 Å
Macromolecule	5'-D(GPCPGPTPAP(125)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	RB

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1I0N	Download File View File

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM RB-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	RB

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1I0O	Download File View File

1.6 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-3'-METHYLENEPHOSPHONATE THYMINE IN PLACE OF T6, HIGH K-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(GPCPGPTPAP(T23)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	K

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1I0P	Download File View File

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)], MEDIUM K-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	K

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1I0Q	Download File View File

1.3 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-METHYL-[TRI(OXYETHYL)] THYMINE IN PLACE OF T6, MEDIUM NA-SALT

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	5'-D(GPCPGPTPAP(126)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	NA

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1I0T	Download File View File

0.6 A STRUCTURE OF Z-DNA CGCGCG

Tereshko, V., Wilds, C.J., Minasov, G., Prakash, T.P., Maier, M.A., Howard, A., Wawrzak, Z., Manoharan, M., Egli, M.

(2001) Nucleic Acids Res 29: 1208-1215

Released	2001-04-04
Method	X-RAY DIFFRACTION 0.6 Å
Macromolecule	5'-D(CPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	SPM

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1KGK	Download File View File

Direct Observation of a Cytosine Analog that Forms Five Hydrogen Bonds to Guanosine; Guanyl G-Clamp

Wilds, C.J., Maier, M.A., Tereshko, V., Manoharan, M., Egli, M.

(2002) Angew Chem Int Ed Engl 41: 115-117

Released	2001-12-21
Method	X-RAY DIFFRACTION 1 Å
Macromolecule	5'-D(GP(GCK)PGPTPAPTPAPCPGPC)-3' (nucleic acid)
Unique Ligands	MOE, SPK

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1MLX	Download File View File

Crystal Structure Analysis of a 2'-O-[2-(Methylthio)-ethyl]-Modified Oligodeoxynucleotide Duplex

Prakash, T.P., Manoharan, M., Kawasaki, A.M., Fraser, A.S., Lesnik, E.A., Sioufi, N., Leeds, J.M., Teplova, M., Egli, M.

(2002) Biochemistry 41: 11642-11648

Released	2002-12-04
Method	X-RAY DIFFRACTION 1.25 Å
Macromolecule	5'-D(GPCPGPTPAPSMTPAPCPGPC)-3' (nucleic acid)

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1NZG	Download File View File

Crystal structure of A-DNA decamer GCGTA(3ME)ACGC, with a modified 5-methyluridine

Prhavc, M., Prakash, T.P., Minasov, G., Egli, M., Manoharan, M.

(2003) Org Lett 5: 2017-2020

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(3ME)PAPCPGPC)-3' (nucleic acid)

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1R3G	Download File View File

1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues

Prakash, T.P., Puschl, A., Lesnik, E., Tereshko, V., Egli, M., Manoharan, M.

(2004) Org Lett 6: 1971-1974

Released	2003-10-21
Method	X-RAY DIFFRACTION 1.16 Å
Macromolecule	5'-D(GPCPGPTPAP(GMU)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	MG

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1XUW	Download File View File

Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs

Pattanayek, R., Sethaphong, L., Pan, C., Prhavc, M., Prakash, T.P., Manoharan, M., Egli, M.

(2004) J Am Chem Soc 126: 15006-15007

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.25 Å
Macromolecule	DNA (5'-D(GPCPGPTPAP(NMT)PAPCPGPC)-3') (nucleic acid)

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1XUX	Download File View File

Structural rationalization of a large difference in RNA affinity despite a small difference in chemistry between two 2'-O-modified nucleic acid analogs

Pattanayek, R., Sethaphong, L., Pan, C., Prhavc, M., Prakash, T.P., Manoharan, M., Egli, M.

(2004) J Am Chem Soc 126: 15006-15007

Released	2004-12-14
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	DNA (5'-D(GPCPGPTPAP(NMS)PAPCPGPC)-3') (nucleic acid)

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1Y7F	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-[hydroxy(methyleneamino)oxy]ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(2NT)PAPCPGPC)-3') (nucleic acid)
Unique Ligands	BA

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1Y84	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-(imidazolyl)ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPCPGPTPAP(EIT)PAPCPGPC)-3' (nucleic acid)
Unique Ligands	MG, SPM

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1Y86	Download File View File

Crystal structure of the A-DNA GCGTATCGC with a 2'-O-[2-(fluoro)ethyl] Thymidine (T)

Egli, M., Minasov, G., Tereshko, V., Pallan, P.S., Teplova, M., Inamati, G.B., Lesnik, E.A., Owens, S.R., Ross, B.S., Prakash, T.P., Manoharan, M.

(2005) Biochemistry 44: 9045-9057

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	5'-D(GPCPGPTPAP(125)PAPCPGPC)-3' (nucleic acid)

1 to 25 of 37 Structures

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