RCSB PDB: Search

3THW \| pdb_00003thw	Download File View File

Human MutSbeta complexed with an IDL of 4 bases (Loop4) and ADP

Yang, W.

(2012) Nat Struct Mol Biol 19: 72-78

Released	2011-12-21
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA Loop4 hairpin (nucleic acid)
Unique Ligands	ADP

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3THX \| pdb_00003thx	Download File View File

Human MutSbeta complexed with an IDL of 3 bases (Loop3) and ADP

Yang, W.

(2012) Nat Struct Mol Biol 19: 72-78

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA Loop3 minus strand (nucleic acid) DNA Loop3 plus strand (nucleic acid)
Unique Ligands	ADP, NA

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3THY \| pdb_00003thy	Download File View File

Human MutSbeta complexed with an IDL of 2 bases (Loop2) and ADP

Yang, W.

(2012) Nat Struct Mol Biol 19: 72-78

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.894 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA Loop2 minus strand (nucleic acid) DNA Loop2 plus strand (nucleic acid)
Unique Ligands	ADP

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3THZ \| pdb_00003thz	Download File View File

Human MutSbeta complexed with an IDL of 6 bases (Loop6) and ADP

Yang, W.

(2012) Nat Struct Mol Biol 19: 72-78

Released	2011-12-21
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA Loop6 minus strand (nucleic acid) DNA Loop6 plus strand (nucleic acid)
Unique Ligands	ADP

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8OLX \| pdb_00008olx	Download File View File

MutSbeta bound to (CAG)2 DNA (canonical form)

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

(2024) bioRxiv

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA (21-MER) (nucleic acid) DNA (27-MER) (nucleic acid)
Unique Ligands	ADP, MG

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8OM5 \| pdb_00008om5	Download File View File

DNA-free open form of MutSbeta

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.52 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein)
Unique Ligands	ADP, MG

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8OM9 \| pdb_00008om9	Download File View File

MutSbeta bound to (CAG)2 DNA (open form)

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.32 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA1 (nucleic acid) DNA2 (nucleic acid)
Unique Ligands	ADP, MG

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8OMA \| pdb_00008oma	Download File View File

MutSbeta bound to 61bp homoduplex DNA

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.29 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA1 (nucleic acid) DNA2 (nucleic acid)
Unique Ligands	ATP, MG

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8OMO \| pdb_00008omo	Download File View File

DNA-unbound MutSbeta-ATP complex (bent clamp form)

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.43 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein)
Unique Ligands	ATP, MG

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8OMQ \| pdb_00008omq	Download File View File

DNA-unbound MutSbeta-ATP complex (straight clamp form)

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2023-05-24
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein)
Unique Ligands	ATP, MG

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8R7C \| pdb_00008r7c	Download File View File

MutSbeta bound to compound CHDI-00915542 in the canonical DNA-mismatch bound form

Thomsen, M., Thieulin-Pardo, G., Steinbacher, S., Brace, G., Tillack, K., Johnson, P., Ritzefeld, M., Schaertl, S., Frush, E., Warfield, B., Ballantyne, G., Lee, J.-H., Witte, D., Finley, M., Prasad, B., Monteagudo, E., Plotnikov, N., Pacifici, R., Maillard, M., Wilkinson, H., Iyer, R., Dominguez, C., Vogt, T., Felsenfeld, D., Haque, T.

(2024) ChemRxiv

Released	2024-11-27
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA (5'-D(CPCPAPTPCPGPAPTPCPGPCPAPGPCPTPTPCPAPGPAPTPAPG)-3') (nucleic acid) DNA (5'-D(PCPAPTPCPGPAPTPCPGPCPAPGPCPTPTPCPAPGPAPTPAPGPG)-3') (nucleic acid) DNA (5'-D(PCPTPAPTPCPTPGPAPAPGPCPCPGPAPTPCPGPAPTPGP*G)-3') (nucleic acid)
Unique Ligands	ADP, CL, PGE, SO4, YKW

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8R7E \| pdb_00008r7e	Download File View File

MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form

Thomsen, M., Thieulin-Pardo, G., Steinbacher, S., Brace, G., Tillack, K., Johnson, P., Ritzefeld, M., Schaertl, S., Frush, E., Warfield, B., Ballantyne, G., Lee, J.-H., Witte, D., Finley, M., Prasad, B., Monteagudo, E., Plotnikov, N., Pacifici, R., Maillard, M., Wilkinson, H., Iyer, R., Dominguez, C., Vogt, T., Felsenfeld, D., Haque, T.

(2024) ChemRxiv

Released	2024-11-27
Method	X-RAY DIFFRACTION 2.783 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA (5'-D(CPAPTPCPGPAPTPCPGPCPAPGPCPTPTPCPAPGPAPTPAPGPG)-3') (nucleic acid) DNA (5'-D(TPCPTPAPTPCPTPGPAPAPGPCPCPGPAPTPCPGPAPTPGP*G)-3') (nucleic acid)
Unique Ligands	ADP, CL, EDO, SO4, YKQ

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8R7V \| pdb_00008r7v	Download File View File

MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form

Haque, T., Brace, G., Felsenfeld, D., Tilack, K., Schaertl, S., Ballantyne, G., Maillard, M., Iyer, R., Prasad, B., Thomsen, M., Wilkionson, H., Plotnikov, N., Ritzefeld, M.

To be published

Released	2024-10-30
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA_61bp_CAG2_loop_Fwd (nucleic acid) DNA_61bp_Complement_Rev (nucleic acid)
Unique Ligands	ADP, MG, SO4, YKQ

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8RZ7 \| pdb_00008rz7	Download File View File

(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.37 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein) DNA_1 (nucleic acid) DNA_2 (nucleic acid)
Unique Ligands	ADP, MG

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8RZ8 \| pdb_00008rz8	Download File View File

MutSbeta-ATPgS with straight MSH2 clamp

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein)
Unique Ligands	AGS, MG

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8RZ9 \| pdb_00008rz9	Download File View File

MutSbeta-ATPgS with kinked MSH2 clamp

Lee, J.-H., Thomsen, M., Daub, H., Steinbacher, S., Sztyler, A., Thieulin-Pardo, G., Neudegger, T., Plotnikov, N., Iyer, R.R., Wilkinson, H., Monteagudo, E., Felsenfeld, D.P., Haque, T., Finley, M., Dominguez, C., Vogt, T.F., Prasad, B.C.

To be published

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.02 Å
Organisms	Homo sapiens
Macromolecule	DNA mismatch repair protein Msh2 (protein) DNA mismatch repair protein Msh3 (protein)
Unique Ligands	AGS, MG

3THW | pdb_00003thw

Human MutSbeta complexed with an IDL of 4 bases (Loop4) and ADP

3THX | pdb_00003thx

Human MutSbeta complexed with an IDL of 3 bases (Loop3) and ADP

3THY | pdb_00003thy

Human MutSbeta complexed with an IDL of 2 bases (Loop2) and ADP

3THZ | pdb_00003thz

Human MutSbeta complexed with an IDL of 6 bases (Loop6) and ADP

8OLX | pdb_00008olx

MutSbeta bound to (CAG)2 DNA (canonical form)

8OM5 | pdb_00008om5

DNA-free open form of MutSbeta

8OM9 | pdb_00008om9

MutSbeta bound to (CAG)2 DNA (open form)

8OMA | pdb_00008oma

MutSbeta bound to 61bp homoduplex DNA

8OMO | pdb_00008omo

DNA-unbound MutSbeta-ATP complex (bent clamp form)

8OMQ | pdb_00008omq

DNA-unbound MutSbeta-ATP complex (straight clamp form)

8R7C | pdb_00008r7c

MutSbeta bound to compound CHDI-00915542 in the canonical DNA-mismatch bound form

8R7E | pdb_00008r7e

MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form

8R7V | pdb_00008r7v

MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form

8RZ7 | pdb_00008rz7

(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp

8RZ8 | pdb_00008rz8

MutSbeta-ATPgS with straight MSH2 clamp

8RZ9 | pdb_00008rz9

MutSbeta-ATPgS with kinked MSH2 clamp

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

3THW | pdb_00003thw

3THX | pdb_00003thx

3THY | pdb_00003thy

3THZ | pdb_00003thz

8OLX | pdb_00008olx

8OM5 | pdb_00008om5

8OM9 | pdb_00008om9

8OMA | pdb_00008oma

8OMO | pdb_00008omo

8OMQ | pdb_00008omq

8R7C | pdb_00008r7c

8R7E | pdb_00008r7e

8R7V | pdb_00008r7v

8RZ7 | pdb_00008rz7

8RZ8 | pdb_00008rz8

8RZ9 | pdb_00008rz9