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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Niwa, H."

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Search Summary

This query matches 82 Structures.

Refinements

Structure Determination Methodology

experimental (82)

Scientific Name of Source Organism

	Homo sapiens (53)
	Thermus thermophilus (6)
	Escherichia coli K-12 (5)
	Aquifex aeolicus (3)
	Aquifex aeolicus VF5 (3)
	Rattus norvegicus (3)
	Thermus thermophilus HB8 (3)
	Aeropyrum pernix K1 (1)
	Escherichia coli (1)
	Hepatitis B virus subtype adyw (1)

More...

Taxonomy

	Eukaryota (58)
	Bacteria (21)
	Archaea (2)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (82)

Polymer Entity Type

Protein (82)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (26)
	2.0 - 2.5 (25)
	2.5 - 3.0 (23)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (23)
	2010 - 2014 (12)
	2015 - 2019 (16)
	2020 - 2024 (23)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (32)
	Oxidoreductases (17)
	Hydrolases (11)
	Ligases (2)
	Lyases (2)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (62)
	Cyclic (22)
	Dihedral (4)

SCOP Classification

	Alpha and beta proteins (a+b) (17)
	All beta proteins (9)
	Alpha and beta proteins (a/b) (8)
	Artifacts (5)
	All alpha proteins (6)

AllSelected

1 to 25 of 82 Structures

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1IXZ	Download File View File

Crystal structure of the FtsH ATPase domain from Thermus thermophilus

Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.

(2002) Structure 10: 1415-1423

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus
Macromolecule	ATP-dependent metalloprotease FtsH (protein)
Unique Ligands	HG, SO4

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1IY0	Download File View File

Crystal structure of the FtsH ATPase domain with AMP-PNP from Thermus thermophilus

Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.

(2002) Structure 10: 1415-1423

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Thermus thermophilus
Macromolecule	ATP-dependent metalloprotease FtsH (protein)
Unique Ligands	ANP

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1IY1	Download File View File

Crystal structure of the FtsH ATPase domain with ADP from Thermus thermophilus

Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.

(2002) Structure 10: 1415-1423

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus
Macromolecule	ATP-dependent metalloprotease FtsH (protein)
Unique Ligands	ADP

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1IY2	Download File View File

Crystal structure of the FtsH ATPase domain from Thermus thermophilus

Niwa, H., Tsuchiya, D., Makyio, H., Yoshida, M., Morikawa, K.

(2002) Structure 10: 1415-1423

Released	2002-11-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermus thermophilus
Macromolecule	ATP-dependent metalloprotease FtsH (protein)
Unique Ligands	SO4

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1OQL	Download File View File

Mistletoe Lectin I from Viscum album complexed with galactose

Niwa, H., Tonevitsky, A.G., Agapov, I.I., Saward, S., Pfuller, U., Palmer, R.A.

(2003) Eur J Biochem 270: 2739-2749

Released	2003-07-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Viscum album
Macromolecule	MISTLETOE LECTIN I (protein)
Unique Ligands	GAL, NAG
Unique branched monosaccharides	NAG

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2BJV	Download File View File

Crystal Structure of PspF(1-275) R168A mutant

Rappas, M., Schumacher, J., Beuron, F., Niwa, H., Bordes, P., Wigneshweraraj, S., Keetch, C.A., Robinson, C.V., Buck, M., Zhang, X.

(2005) Science 307: 1972

Released	2005-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)

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2BJW	Download File View File

PspF AAA domain

Rappas, M., Schumacher, J., Beuron, F., Niwa, H., Bordes, P., Wigneshweraraj, S., Keetch, C.A., Robinson, C.V., Buck, M., Zhang, X.

(2005) Science 307: 1972

Released	2005-03-31
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)

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2C96	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biol 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ATP

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2C98	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biol 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ADP

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2C99	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biol 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ANP

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2C9C	Download File View File

Structural basis of the nucleotide driven conformational changes in the AAA domain of transcription activator PspF

Rappas, M., Schumacher, J., Niwa, H., Buck, M., Zhang, X.

(2006) J Mol Biol 357: 481

Released	2006-02-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	PSP OPERON TRANSCRIPTIONAL ACTIVATOR (protein)
Unique Ligands	ATP, MG

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2CXY	Download File View File

Crystal structure of the hBAF250b AT-rich interaction domain (ARID)

Shimada, A., Niwa, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	BAF250b subunit (protein)

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2DHR	Download File View File

Whole cytosolic region of ATP-dependent metalloprotease FtsH (G399L)

Suno, R., Niwa, H., Tsuchiya, D., Zhang, X., Yoshida, M., Morikawa, K.

(2006) Mol Cell 22: 575-585

Released	2006-06-27
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Thermus thermophilus
Macromolecule	FtsH (protein)
Unique Ligands	ADP

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2DI4	Download File View File

Crystal structure of the FtsH protease domain

Suno, R., Niwa, H., Tsuchiya, D., Zhang, X., Yoshida, M., Morikawa, K.

(2006) Mol Cell 22: 575-585

Released	2006-06-27
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Aquifex aeolicus
Macromolecule	Cell division protein ftsH homolog (protein)
Unique Ligands	HG

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2DUY	Download File View File

Crystal structure of competence protein ComEA-related protein from Thermus thermophilus HB8

Niwa, H., Shimada, A., Chen, L., Liu, Z.-J., Wang, B.-C., Ebihara, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Competence protein ComEA-related protein (protein)
Unique Ligands	CL

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2EFK	Download File View File

Crystal structure of the EFC domain of Cdc42-interacting protein 4

Shimada, A., Niwa, H., Chen, L., Liu, Z.-J., Wang, B.-C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Cell 129: 761-772

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Cdc42-interacting protein 4 (protein)

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2EFL	Download File View File

Crystal structure of the EFC domain of formin-binding protein 17

Shimada, A., Niwa, H., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Cell 129: 761-772

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	Formin-binding protein 1 (protein)

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2EGJ	Download File View File

Crystal Structure of Hypothetical Protein(AQ1494) from Aquifex aeolicus

Kumarevel, T.S., Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	Hypothetical protein aq_1494 (protein)

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2EGR	Download File View File

Crystal Structure of Hypothetical Protein(AQ1494) from Aquifex aeolicus

Kumarevel, T.S., Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Aquifex aeolicus
Macromolecule	Hypothetical protein aq_1494 (protein)

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2EGT	Download File View File

Crystal Structure of Hypothetical protein (AQ1549) from Aquifex aeolicus

Niwa, H., Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Hypothetical protein AQ_1549 (protein)

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2EH9	Download File View File

Crystal structure of the HBAF250B at-rich interaction domain (ARID)

Niwa, H., Shimada, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	AT-rich interactive domain-containing protein 1B (protein)
Unique Ligands	CL, ZN

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2EI5	Download File View File

Crystal Structure of Hypothetical protein(TTHA0061) from Thermus thermophilus

Niwa, H., Kumarevel, T.S., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-18
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Thermus thermophilus
Macromolecule	Hypothetical protein TTHA0061 (protein)
Unique Ligands	BTB

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2YV1	Download File View File

Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Methanocaldococcus jannaschii DSM 2661

Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Succinyl-CoA ligase [ADP-forming] subunit alpha (protein)

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2YV2	Download File View File

Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Aeropyrum pernix K1

Niwa, H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-10-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aeropyrum pernix K1
Macromolecule	Succinyl-CoA synthetase alpha chain (protein)

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2Z1K	Download File View File

Crystal Structure of Ttha1563 from Thermus thermophilus HB8

Niwa, H., Shimada, A., Matsunaga, E., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus HB8
Macromolecule	(Neo)pullulanase (protein)
Unique Ligands	PO4
Unique branched monosaccharides	GLC

1 to 25 of 82 Structures

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