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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Pan, J."

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This query matches 37 Structures.

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2EA1	Download File View File

Crystal structure of Ribonuclease I from Escherichia coli COMPLEXED WITH GUANYLYL-2(PRIME),5(PRIME)-GUANOSINE

Zhou, K., Pan, J., Padmanabhan, S., Lim, R.W., Lim, L.W.

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease I (protein)
Unique Ligands	GPG

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2PGG	Download File View File

Crystal Structure of a Birnavirus (IBDV) RNA-dependent RNA Polymerase VP1

Pan, J., Vakharia, V.N., Tao, Y.J.

(2007) Proc Natl Acad Sci U S A 104: 7385-7390

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Infectious bursal disease virus
Macromolecule	RNA-directed RNA polymerase (protein)

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3ES5	Download File View File

Crystal Structure of Partitivirus (PsV-F)

Pan, J., Dong, L., Lin, L., Ochoa, W.F., Sinkovits, R.S., Havens, W.M., Nibert, M.L., Baker, T.S., Ghabrial, S.A., Tao, Y.J.

(2009) Proc Natl Acad Sci U S A 106: 4225-4230

Released	2009-03-10
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Penicillium stoloniferum virus F
Macromolecule	Putative capsid protein (protein)

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3IYM	Download File View File

Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling

Tang, J., Pan, J., Havens, W.F., Ochoa, W.F., Li, H., Sinkovits, R.S., Guu, T.S.Y., Ghabrial, S.A., Nibert, M.L., Tao, J.Y., Baker, T.S.

(2010) Biophys J 99: 685-694

Released	2010-07-28
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Penicillium stoloniferum virus S
Macromolecule	Capsid protein (protein)

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4IRE	Download File View File

Crystal structure of GLIC with mutations at the loop C region

Chen, Q., Pan, J., Liang, Y.H., Xu, Y., Tang, P.

(2013) PLoS One 8: e64326-e64326

Released	2013-04-24
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Gloeobacter violaceus PCC 7421
Macromolecule	Proton-gated ion channel (protein)
Unique Ligands	ACT, LMD, OXL, PC1

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4XBK	Download File View File

2-deoxyribose-5-phosphate aldolase from Lactobacillus brevis

Jiao, X.-C., Pan, J., Xu, G.-C., Kong, X.-D., Chen, Q., Zhang, Z.-J., Xu, J.-H.

(2015) Catal Sci Technol 5: 4048-4054

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Levilactobacillus brevis ATCC 14869 = DSM 20054
Macromolecule	Deoxyribose-phosphate aldolase (protein)
Unique Ligands	ACY

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4XBS	Download File View File

2-deoxyribose-5-phosphate aldolase mutant - E78K

Jiao, X.-C., Pan, J., Xu, G.-C., Kong, X.-D., Chen, Q., Zhang, Z.-J., Xu, J.-H.

(2015) Catal Sci Technol 5: 4048-4054

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Levilactobacillus brevis ATCC 14869 = DSM 20054
Macromolecule	Deoxyribose-phosphate aldolase (protein)

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5UJZ	Download File View File

CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 1

Liu, Y., Pan, J., Caradonna, T., Jenni, S., Raymond, D.D., Schmidt, A.G., Harrison, S.C., Grigorieff, N.

(2017) J Mol Biol 429: 1829-1839

Released	2017-05-31
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Influenza A virus (A/Solomon Islands/3/2006(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein) scFv (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5UK0	Download File View File

CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2

Liu, Y., Pan, J., Caradonna, T., Jenni, S., Raymond, D.D., Schmidt, A.G., Harrison, S.C., Grigorieff, N.

(2017) J Mol Biol 429: 1829-1839

Released	2017-05-31
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Influenza A virus (A/Solomon Islands/3/2006(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein) scFV (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5UK1	Download File View File

CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3

Liu, Y., Pan, J., Caradonna, T., Jenni, S., Raymond, D.D., Schmidt, A.G., Harrison, S.C., Grigorieff, N.

(2017) J Mol Biol 429: 1829-1839

Released	2017-05-31
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Influenza A virus (A/Solomon Islands/3/2006(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein) scFv (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5UK2	Download File View File

CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4

Liu, Y., Pan, J., Caradonna, T., Jenni, S., Raymond, D.D., Schmidt, A.G., Harrison, S.C., Grigorieff, N.

(2017) J Mol Biol 429: 1829-1839

Released	2017-05-31
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Influenza A virus (A/Solomon Islands/3/2006(H1N1))
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein) scFv (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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6PWU	Download File View File

Structure of full-length, fully glycosylated, non-modified HIV-1 gp160 bound to PG16 Fab

Pan, J., Chen, B., Harrison, S.C.

(2020) J Mol Biol 432: 1158-1168

Released	2020-02-26
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody PG16 Fab heavy chain (protein) Antibody PG16 Fab light chain (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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6U5O	Download File View File

Structure of the Human Metapneumovirus Polymerase bound to the phosphoprotein tetramer

Pan, J., Qian, X., Lattmann, S., Sahili, A.E., Yeo, T.H., Kalocsay, M., Fearns, R., Lescar, J.

(2020) Nature 577: 275-279

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Human metapneumovirus CAN97-83
Macromolecule	Phosphoprotein (protein) RNA-directed RNA polymerase L (protein)

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6ULC	Download File View File

Structure of full-length, fully glycosylated, non-modified HIV-1 gp160 bound to PG16 Fab at a nominal resolution of 4.6 Angstrom

Pan, J., Chen, B., Harrison, S.C.

(2020) J Mol Biol 432: 1158-1168

Released	2020-04-29
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp41 (protein) antibody PG16 Fab heavy chain (protein) antibody PG16 Fab light chain (protein) envelope glycoprotein gp120,envelope glycoprotein gp120 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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7KFV	Download File View File

Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B12 Fab)

Pan, J., Abraham, J., Clark, L., Clark, S.

(2020) bioRxiv

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.102 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Heavy chain of antibody C1A-B12 Fab (protein) Spike glycoprotein (protein) light chain of antibody C1A-B3 Fab (protein)
Unique Ligands	NAG

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7KFW	Download File View File

Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B3 Fab)

Pan, J., Abraham, J., Clark, L., Clark, S.

(2020) bioRxiv

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.792 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) heavy chain of antibody C1A-B3 Fab (protein) light chain of antibody C1A-B3 Fab (protein)
Unique Ligands	NAG

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7KFX	Download File View File

Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-C2 Fab)

Pan, J., Abraham, J., Clark, L., Clark, S.

(2020) bioRxiv

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.226 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) heavy chain of human antibody C1A-C2 Fab (protein) light chain of human antibody C1A-C2 Fab (protein)
Unique Ligands	NAG

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7KFY	Download File View File

Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab)

Pan, J., Abraham, J., Clark, L., Clark, S.

(2020) bioRxiv

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.157 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) heavy chain of human antibody C1A-F10 Fab (protein) light chain of human antibody C1A-F10 Fab (protein)
Unique Ligands	NAG

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7SN0	Download File View File

Crystal structure of spike protein receptor binding domain of escape mutant SARS-CoV-2 from immunocompromised patient (d146*) in complex with human receptor ACE2

Pan, J., Abraham, J., Clark, S.

(2022) Science 375: eabl6251-eabl6251

Released	2021-12-08
Method	X-RAY DIFFRACTION 3.08 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Surface glycoprotein (protein)
Unique Ligands	CL, NAG, ZN
Unique branched monosaccharides	BMA, GAL, MAN, NAG

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7SN1	Download File View File

Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab

Pan, J., Abraham, J., Clark, S.

(2022) Science 375: eabl6251-eabl6251

Released	2021-12-08
Method	X-RAY DIFFRACTION 1.467 Å
Organisms	Homo sapiens
Macromolecule	neutralizing antibody C1C-A3 Fab heavy chain (protein) neutralizing antibody C1C-A3 Fab light chain (protein)

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7SN2	Download File View File

Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab

Pan, J., Abraham, J., Yang, P., Shankar, S.

(2022) Science 375: eabl6251-eabl6251

Released	2021-12-08
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) neutralizing antibody C1C-A3 Fab heavy chain (protein) neutralizing antibody C1C-A3 Fab light chain (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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7SN3	Download File View File

Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)

Pan, J., Abraham, J., Shankar, S.

(2022) Science 375: eabl6251-eabl6251

Released	2021-12-08
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) neutralizing antibody C1C-A3 heavy chain variable region (protein) neutralizing antibody C1C-A3 light chain variable region (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7XDU	Download File View File

TtherAmDH-NAD+

Chen, C., Qian, Y.Y., Pan, J., Bai, Y.P., Xu, J.H.

To be published

Released	2023-04-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermoanaerobacter thermohydrosulfuricus
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	NAD

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7XWU	Download File View File

Ketoreductase CpKR mutant - M1

Chen, C., Zheng, Y.C., Pan, J., Xu, J.H.

To be published

Released	2023-05-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Candida parapsilosis
Macromolecule	Epimerase domain-containing protein (protein)
Unique Ligands	NDP, PEG

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7Y0K	Download File View File

Crystal structure of CpKR in complex with NADPH complex from Candida parapsilosis

Chen, C., Pan, J., Xu, J.H.

To be published

Released	2023-06-14
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Candida parapsilosis
Macromolecule	Epimerase domain-containing protein (protein)
Unique Ligands	NDP