RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Rappas, M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (7)
	Gallus gallus (2)
	Homo sapiens (2)
	Influenza A virus (A/Shanghai/02/2013(H7N9)) (1)
	Mus musculus (1)

Taxonomy

	Riboviria (8)
	Eukaryota (5)

Experimental Method

	X-RAY DIFFRACTION (9)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (1)
	2020 - 2024 (7)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Asymmetric (7)
	Cyclic (3)

SCOP Classification

All beta proteins (5)

AllSelected

1 to 10 of 10 Structures

Page 1 of 1

Sort by

Explore in 3D

2WRY	Download File View File

Crystal structure of chicken cytokine interleukin 1 beta

Lu, W.S., Cheng, C.S., Lyu, P.C., Lee, L.H., Wang, W.C., Yin, H.S.

(2011) Mol Immunol 48: 947

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Gallus gallus
Macromolecule	INTERLEUKIN-1BETA (protein)

Explore in 3D

3NJ5	Download File View File

Crystal structure of chicken IL-1 hydrophobic cavity mutant 157

Yin, H.S., Chen, Y.W.

(2011) Mol Immunol 48: 947-955

Released	2011-06-22
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Gallus gallus
Macromolecule	IL-1 beta (protein)

Explore in 3D

5VAG	Download File View File

Crystal structure of H7-specific antibody m826 in complex with the HA1 domain of hemagglutinin from H7N9 influenza virus

Song, H., Ying, T., Ji, X.

(2017) Cell Host Microbe 22: 471-483.e5

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Influenza A virus (A/Shanghai/02/2013(H7N9))
Macromolecule	Heavy chain of antibody m826 (protein) Hemagglutinin (protein) Light chain of antibody m826 (protein)
Unique Ligands	EDO

Explore in 3D

7C8R	Download File View File

Complex Structure of SARS-CoV-2 3CL Protease with TG-0203770

Lee, C.C., Wang, A.H.J., Kuo, C.J., Liang, P.H.

To be published

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	TG3

Explore in 3D

7C8T	Download File View File

Complex Structure of SARS-CoV-2 3CL Protease with TG-0205221

Lee, C.C., Wang, A.H.J., Kuo, C.J., Liang, P.H.

To be published

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	NOL

Explore in 3D

7WUE	Download File View File

Crystal structure of SARS-CoV-2 Receptor Binding Domain in complex with the monoclonal antibody m31A7

Mohapatra, A.

(2022) Sci Transl Med 14: eabm0899-eabm0899

Released	2022-03-16
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) m31A7 Fab HEAVY CHAIN (protein) m31A7 Fab LIGHT CHAIN (protein)
Unique branched monosaccharides	BMA, FUC, NAG

Explore in 3D

7WUH	Download File View File

SARS-CoV-2 Spike in complex with Fab of m31A7

Chen, X., Wu, Y.-M.

(2022) Sci Transl Med 14: eabm0899-eabm0899

Released	2022-03-23
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein) m31A7 Fab heavy chain (protein) m31A7 Fab light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

8IQJ	Download File View File

Crystal structure of SARS-CoV2 N-NTD

Hong, J.Y., Hou, M.H.

(2024) Biophys J 123: 478-488

Released	2024-02-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Nucleoprotein (protein)

Explore in 3D

8IV3	Download File View File

Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygramine

Hong, J.Y., Hou, M.H.

(2024) Biophys J 123: 478-488

Released	2024-02-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Nucleoprotein (protein)
Unique Ligands	DJU

Explore in 3D

8J6X	Download File View File

Crystal structure of SARS-CoV2 N-NTD complexed with 5-Benzyloxygramine derivative (P3-8)

Hong, J.Y., Hou, M.H.

(2024) Biophys J 123: 478-488

Released	2024-02-07
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Nucleoprotein (protein)
Unique Ligands	U2H

1 to 10 of 10 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification